Atmospheric pCO2

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Last updated: 2020-11-26

Checks: 7 0

Knit directory: Cant_eMLR/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

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R Markdown file: up-to-date

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Environment: empty

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Seed: set.seed(20200707)

The command set.seed(20200707) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

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Cache: none

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File paths: relative

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Repository version: bbffe70

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version bbffe70. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

Ignored files:
    Ignored:    .Rproj.user/
    Ignored:    data/
    Ignored:    dump/

Untracked files:
    Untracked:  code/biogeochemical_functions.R
    Untracked:  code/test_scripts/analysis_previous_studies.Rmd
    Untracked:  code/test_scripts/read_World_Ocean_Atlas_2013_Clement.Rmd

Unstaged changes:
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    Modified:   code/mapping_functions.R
    Modified:   code/plotting_functions.R
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---

1 Read data

• Data source: Globally averaged marine surface annual mean data from ESRL-NOAA

co2_atm <- read_table2(here::here("data/input/pCO2_atmosphere",
                              "co2_annmean_gl.txt"),
                   col_names = FALSE, comment = "#")

co2_atm <- co2_atm %>% 
  select(-X3)

names(co2_atm) <- c("year", "pCO2")

2 Time series

co2_atm %>% 
  ggplot(aes(year, pCO2)) +
  geom_path() +
  geom_point()

3 Write clean file

co2_atm %>% 
  write_csv(here::here("data/interim",
                       "co2_atm.csv"))

Session information

sessionInfo()

R version 4.0.2 (2020-06-22)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)

Matrix products: default

locale:
[1] LC_COLLATE=English_Germany.1252  LC_CTYPE=English_Germany.1252   
[3] LC_MONETARY=English_Germany.1252 LC_NUMERIC=C                    
[5] LC_TIME=English_Germany.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] metR_0.7.0      scico_1.2.0     patchwork_1.0.1 collapse_1.3.2 
 [5] forcats_0.5.0   stringr_1.4.0   dplyr_1.0.0     purrr_0.3.4    
 [9] readr_1.3.1     tidyr_1.1.0     tibble_3.0.3    ggplot2_3.3.2  
[13] tidyverse_1.3.0 workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] httr_1.4.2        jsonlite_1.7.0    here_0.1          modelr_0.1.8     
 [5] Formula_1.2-3     assertthat_0.2.1  blob_1.2.1        cellranger_1.1.0 
 [9] yaml_2.2.1        pillar_1.4.6      backports_1.1.8   lattice_0.20-41  
[13] glue_1.4.1        digest_0.6.25     promises_1.1.1    checkmate_2.0.0  
[17] rvest_0.3.6       colorspace_1.4-1  sandwich_2.5-1    htmltools_0.5.0  
[21] httpuv_1.5.4      Matrix_1.2-18     pkgconfig_2.0.3   broom_0.7.0      
[25] haven_2.3.1       xtable_1.8-4      scales_1.1.1      whisker_0.4      
[29] later_1.1.0.1     git2r_0.27.1      farver_2.0.3      generics_0.0.2   
[33] ellipsis_0.3.1    withr_2.2.0       cli_2.0.2         magrittr_1.5     
[37] crayon_1.3.4      readxl_1.3.1      evaluate_0.14     fs_1.4.2         
[41] fansi_0.4.1       xml2_1.3.2        tools_4.0.2       data.table_1.13.0
[45] hms_0.5.3         lifecycle_0.2.0   munsell_0.5.0     reprex_0.3.0     
[49] compiler_4.0.2    lfe_2.8-5.1       rlang_0.4.7       grid_4.0.2       
[53] rstudioapi_0.11   labeling_0.3      rmarkdown_2.3     gtable_0.3.0     
[57] DBI_1.1.0         R6_2.4.1          zoo_1.8-8         lubridate_1.7.9  
[61] knitr_1.30        rprojroot_1.3-2   stringi_1.4.6     parallel_4.0.2   
[65] Rcpp_1.0.5        vctrs_0.3.2       dbplyr_1.4.4      tidyselect_1.1.0 
[69] xfun_0.16