Overview XYZT variables
Jens Daniel Müller
21 December, 2022
Last updated: 2022-12-21
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Knit directory:
RECCAP2_CESM_ETHZ_submission_v2/
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1 File names
overview <-
read_csv("data/overview/overview_files.csv")
variables <-
overview %>%
filter(shape == "XYZT") %>%
distinct(variable_id) %>%
pull()
# set name of model to be subsetted
experiment_IDs <- c("A", "B", "C", "D")2 Plots
Below, please find plots of the variables in the following order:
- dissic, epc, no3, o2, po4, si, so, talk, thetao
Plots for all variables are shown one after the other for the model runs:
- A, B, C, D
# variables <- variables[1]
# experiment_IDs <- experiment_IDs[1]
for (i_experiment_ID in experiment_IDs) {
for (i_variable in variables) {
# i_experiment_ID <- experiment_IDs[1]
# i_variable <- variables[1]
# read list of all files
file <- paste(i_variable,
"_CESM-ETHZ_",
i_experiment_ID,
"_1_gr_1980-2018_v20221125.nc",
sep = "")
print(file)
# read in data
variable_data <-
read_ncdf(paste(path_cmorized_annual,
file,
sep = ""))
# convert to tibble
variable_data_tibble <- variable_data %>%
as_tibble()
# drop units for plotting
variable_data_tibble <- variable_data_tibble %>%
drop_units()
# remove open link to nc file
rm(variable_data)
variable_data_tibble_climatology <-
variable_data_tibble %>%
group_by(depth) %>%
summarise(
"mean" := mean(!!sym(i_variable), na.rm = TRUE),
"min" := min(!!sym(i_variable), na.rm = TRUE),
"max" := max(!!sym(i_variable), na.rm = TRUE)
) %>%
ungroup()
print(
variable_data_tibble_climatology %>%
arrange(depth) %>%
ggplot() +
geom_ribbon(aes(
xmin = min, xmax = max, y = depth,
fill = "min/max"
), alpha = 0.3) +
geom_path(aes(mean, depth, col="mean")) +
scale_y_reverse() +
scale_fill_viridis_d() +
scale_color_viridis_d() +
labs(
title = paste("experiment_ID:", i_experiment_ID),
y = i_variable
) +
theme(legend.title = element_blank())
)
# print(
# variable_data_tibble %>%
# ggplot(aes(!!sym(i_variable), depth)) +
# geom_bin2d(bins = 100) +
# scale_y_reverse() +
# scale_fill_viridis_c() +
# labs(
# title = paste("experiment_ID:", i_experiment_ID)
# )
# )
}
}[1] "dissic_CESM-ETHZ_A_1_gr_1980-2018_v20221125.nc"
[1] "epc_CESM-ETHZ_A_1_gr_1980-2018_v20221125.nc"
[1] "no3_CESM-ETHZ_A_1_gr_1980-2018_v20221125.nc"
[1] "o2_CESM-ETHZ_A_1_gr_1980-2018_v20221125.nc"
[1] "po4_CESM-ETHZ_A_1_gr_1980-2018_v20221125.nc"
[1] "si_CESM-ETHZ_A_1_gr_1980-2018_v20221125.nc"
[1] "so_CESM-ETHZ_A_1_gr_1980-2018_v20221125.nc"
[1] "talk_CESM-ETHZ_A_1_gr_1980-2018_v20221125.nc"
[1] "thetao_CESM-ETHZ_A_1_gr_1980-2018_v20221125.nc"
[1] "dissic_CESM-ETHZ_B_1_gr_1980-2018_v20221125.nc"
[1] "epc_CESM-ETHZ_B_1_gr_1980-2018_v20221125.nc"
[1] "no3_CESM-ETHZ_B_1_gr_1980-2018_v20221125.nc"
[1] "o2_CESM-ETHZ_B_1_gr_1980-2018_v20221125.nc"
[1] "po4_CESM-ETHZ_B_1_gr_1980-2018_v20221125.nc"
[1] "si_CESM-ETHZ_B_1_gr_1980-2018_v20221125.nc"
[1] "so_CESM-ETHZ_B_1_gr_1980-2018_v20221125.nc"
[1] "talk_CESM-ETHZ_B_1_gr_1980-2018_v20221125.nc"
[1] "thetao_CESM-ETHZ_B_1_gr_1980-2018_v20221125.nc"
[1] "dissic_CESM-ETHZ_C_1_gr_1980-2018_v20221125.nc"
[1] "epc_CESM-ETHZ_C_1_gr_1980-2018_v20221125.nc"
[1] "no3_CESM-ETHZ_C_1_gr_1980-2018_v20221125.nc"
[1] "o2_CESM-ETHZ_C_1_gr_1980-2018_v20221125.nc"
[1] "po4_CESM-ETHZ_C_1_gr_1980-2018_v20221125.nc"
[1] "si_CESM-ETHZ_C_1_gr_1980-2018_v20221125.nc"
[1] "so_CESM-ETHZ_C_1_gr_1980-2018_v20221125.nc"
[1] "talk_CESM-ETHZ_C_1_gr_1980-2018_v20221125.nc"
[1] "thetao_CESM-ETHZ_C_1_gr_1980-2018_v20221125.nc"
[1] "dissic_CESM-ETHZ_D_1_gr_1980-2018_v20221125.nc"
[1] "epc_CESM-ETHZ_D_1_gr_1980-2018_v20221125.nc"
[1] "no3_CESM-ETHZ_D_1_gr_1980-2018_v20221125.nc"
[1] "o2_CESM-ETHZ_D_1_gr_1980-2018_v20221125.nc"
[1] "po4_CESM-ETHZ_D_1_gr_1980-2018_v20221125.nc"
[1] "si_CESM-ETHZ_D_1_gr_1980-2018_v20221125.nc"
[1] "so_CESM-ETHZ_D_1_gr_1980-2018_v20221125.nc"
[1] "talk_CESM-ETHZ_D_1_gr_1980-2018_v20221125.nc"
[1] "thetao_CESM-ETHZ_D_1_gr_1980-2018_v20221125.nc"
sessionInfo()R version 4.2.2 (2022-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.4
Matrix products: default
BLAS: /usr/local/R-4.2.2/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.2.2/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] units_0.8-0 tidync_0.3.0 stars_0.6-0 sf_1.0-9
[5] abind_1.4-5 geomtextpath_0.1.1 colorspace_2.0-3 marelac_2.1.10
[9] shape_1.4.6 ggforce_0.4.1 metR_0.13.0 scico_1.3.1
[13] patchwork_1.1.2 collapse_1.8.9 forcats_0.5.2 stringr_1.4.1
[17] dplyr_1.0.10 purrr_0.3.5 readr_2.1.3 tidyr_1.2.1
[21] tibble_3.1.8 ggplot2_3.4.0 tidyverse_1.3.2 workflowr_1.7.0
loaded via a namespace (and not attached):
[1] googledrive_2.0.0 ellipsis_0.3.2 class_7.3-20
[4] rprojroot_2.0.3 fs_1.5.2 rstudioapi_0.14
[7] proxy_0.4-27 farver_2.1.1 bit64_4.0.5
[10] fansi_1.0.3 lubridate_1.9.0 xml2_1.3.3
[13] ncdf4_1.19 cachem_1.0.6 knitr_1.41
[16] polyclip_1.10-4 jsonlite_1.8.3 gsw_1.1-1
[19] broom_1.0.1 dbplyr_2.2.1 compiler_4.2.2
[22] httr_1.4.4 backports_1.4.1 assertthat_0.2.1
[25] fastmap_1.1.0 gargle_1.2.1 cli_3.4.1
[28] later_1.3.0 tweenr_2.0.2 htmltools_0.5.3
[31] tools_4.2.2 gtable_0.3.1 glue_1.6.2
[34] Rcpp_1.0.9 RNetCDF_2.6-1 cellranger_1.1.0
[37] jquerylib_0.1.4 vctrs_0.5.1 lwgeom_0.2-10
[40] xfun_0.35 ps_1.7.2 rvest_1.0.3
[43] ncmeta_0.3.5 timechange_0.1.1 lifecycle_1.0.3
[46] googlesheets4_1.0.1 oce_1.7-10 getPass_0.2-2
[49] MASS_7.3-58.1 scales_1.2.1 vroom_1.6.0
[52] hms_1.1.2 promises_1.2.0.1 parallel_4.2.2
[55] yaml_2.3.6 memoise_2.0.1 sass_0.4.4
[58] stringi_1.7.8 highr_0.9 e1071_1.7-12
[61] checkmate_2.1.0 rlang_1.0.6 pkgconfig_2.0.3
[64] systemfonts_1.0.4 evaluate_0.18 SolveSAPHE_2.1.0
[67] labeling_0.4.2 bit_4.0.5 processx_3.8.0
[70] tidyselect_1.2.0 seacarb_3.3.1 magrittr_2.0.3
[73] R6_2.5.1 generics_0.1.3 DBI_1.1.3
[76] pillar_1.8.1 haven_2.5.1 whisker_0.4
[79] withr_2.5.0 modelr_0.1.10 crayon_1.5.2
[82] KernSmooth_2.23-20 utf8_1.2.2 tzdb_0.3.0
[85] rmarkdown_2.18 grid_4.2.2 readxl_1.4.1
[88] data.table_1.14.6 callr_3.7.3 git2r_0.30.1
[91] reprex_2.0.2 digest_0.6.30 classInt_0.4-8
[94] httpuv_1.6.6 textshaping_0.3.6 munsell_0.5.0
[97] viridisLite_0.4.1 bslib_0.4.1