Last updated: 2022-10-23

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Knit directory: emlr_obs_preprocessing/

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library(reticulate)

1 Required packages

Packages available on CRAN are not listed here.

Following packages need to be installed but are not available on CRAN:

Run the code below for installation from Github repositories.

remotes::install_github("moodymudskipper/cutr")

2 Python

2.1 Code

Python code used in this project is stored in /code/python_scripts and sourced from there, when required in .Rmd files.

2.2 Required packages

To install required python packages from within R-Studio, run the code below.

# the commands below must only be run once, when you first run the python code and need to install required packages

# not required on eth server, because packages are already installed

# py_install("pandas")
# py_install("numpy")
# py_install("shapely")
# py_install("math")

sessionInfo()
R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.3

Matrix products: default
BLAS:   /usr/local/R-4.1.2/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.1.2/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] reticulate_1.23 workflowr_1.7.0

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.8       bslib_0.3.1      compiler_4.1.2   pillar_1.6.4    
 [5] later_1.3.0      git2r_0.29.0     jquerylib_0.1.4  tools_4.1.2     
 [9] getPass_0.2-2    digest_0.6.29    lattice_0.20-45  jsonlite_1.7.3  
[13] evaluate_0.14    tibble_3.1.6     lifecycle_1.0.1  png_0.1-7       
[17] pkgconfig_2.0.3  rlang_1.0.2      Matrix_1.4-0     cli_3.1.1       
[21] rstudioapi_0.13  yaml_2.2.1       xfun_0.29        fastmap_1.1.0   
[25] httr_1.4.2       stringr_1.4.0    knitr_1.37       sass_0.4.0      
[29] fs_1.5.2         vctrs_0.3.8      grid_4.1.2       rprojroot_2.0.2 
[33] glue_1.6.0       R6_2.5.1         processx_3.5.2   fansi_1.0.2     
[37] rmarkdown_2.11   callr_3.7.0      magrittr_2.0.1   whisker_0.4     
[41] ps_1.6.0         promises_1.2.0.1 htmltools_0.5.2  ellipsis_0.3.2  
[45] httpuv_1.6.5     utf8_1.2.2       stringi_1.7.6    crayon_1.4.2