Last updated: 2022-10-23
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Knit directory: emlr_obs_preprocessing/
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Rmd | 221ee12 | jens-daniel-mueller | 2022-10-23 | included Sea of Japan |
html | bafeecc | jens-daniel-mueller | 2022-06-07 | Build site. |
Rmd | 46f2c6b | jens-daniel-mueller | 2022-06-06 | included Nicos xover analysis for adjusted Knorr data |
html | e949567 | jens-daniel-mueller | 2022-04-13 | Build site. |
html | aea9afe | jens-daniel-mueller | 2022-04-07 | Build site. |
html | 9451c4b | jens-daniel-mueller | 2022-04-06 | Build site. |
Rmd | 5d7b7c9 | jens-daniel-mueller | 2022-04-06 | rerun all with lat max 65N |
html | 7e94d73 | jens-daniel-mueller | 2022-04-06 | Build site. |
html | 527e41b | jens-daniel-mueller | 2022-04-02 | Build site. |
Rmd | 65f212d | jens-daniel-mueller | 2022-04-02 | test alternative density values |
html | 8aa0950 | jens-daniel-mueller | 2022-04-02 | Build site. |
Rmd | ce7429a | jens-daniel-mueller | 2022-04-02 | test alternative density values |
html | f088f55 | jens-daniel-mueller | 2022-04-01 | Build site. |
Rmd | d23e425 | jens-daniel-mueller | 2022-04-01 | rerun all including arctic and North Atlantic biome |
html | dde77eb | jens-daniel-mueller | 2022-04-01 | Build site. |
Rmd | a1ea47d | jens-daniel-mueller | 2022-04-01 | rerun all including arctic and North Atlantic biome |
html | 02a01ef | jens-daniel-mueller | 2022-03-10 | Build site. |
Rmd | c6d5f07 | jens-daniel-mueller | 2022-03-10 | revised crossover analysis |
html | fecc329 | jens-daniel-mueller | 2022-02-25 | Build site. |
Rmd | 4030fe6 | jens-daniel-mueller | 2022-02-25 | added cruise by cruise offset analysis |
html | 6e65117 | jens-daniel-mueller | 2022-02-16 | Build site. |
html | f2871b9 | jens-daniel-mueller | 2021-11-20 | Build site. |
html | 0908ee5 | jens-daniel-mueller | 2021-11-15 | Build site. |
html | 6d6a23e | jens-daniel-mueller | 2021-11-01 | Build site. |
Rmd | 2f36786 | jens-daniel-mueller | 2021-11-01 | preprocess adjustment table, create new basinmaps |
html | 2a50fa9 | jens-daniel-mueller | 2021-10-28 | Build site. |
Rmd | 67de9ab | jens-daniel-mueller | 2021-10-28 | preprocess tracers |
html | fb9c1e9 | jens-daniel-mueller | 2021-09-28 | Build site. |
Rmd | 67d6850 | jens-daniel-mueller | 2021-09-28 | SO_2 basin mask created |
html | 90b0670 | jens-daniel-mueller | 2021-08-06 | Build site. |
Rmd | 1a3fb91 | jens-daniel-mueller | 2021-08-06 | added 1 basin mask, included reccap2 atm co2 |
html | 217cf5e | jens-daniel-mueller | 2021-07-16 | Build site. |
Rmd | da1b770 | jens-daniel-mueller | 2021-07-16 | added SO_5 basin mask |
html | e49875a | jens-daniel-mueller | 2021-07-07 | Build site. |
html | 6312bd4 | jens-daniel-mueller | 2021-07-07 | Build site. |
html | 58bc706 | jens-daniel-mueller | 2021-07-06 | Build site. |
Rmd | 0db89e1 | jens-daniel-mueller | 2021-07-06 | rerun with revised variable names |
html | f600971 | jens-daniel-mueller | 2021-07-02 | Build site. |
html | 265c4ef | jens-daniel-mueller | 2021-06-04 | Build site. |
Rmd | 00065c8 | jens-daniel-mueller | 2021-06-04 | included OceanSODA |
html | c79346a | jens-daniel-mueller | 2021-06-03 | Build site. |
html | 0ef91d5 | jens-daniel-mueller | 2021-05-12 | Build site. |
Rmd | f091aa5 | jens-daniel-mueller | 2021-05-12 | removed Sea of Japan from basin mask |
html | ace484d | jens-daniel-mueller | 2021-05-12 | Build site. |
Rmd | 149c948 | jens-daniel-mueller | 2021-05-12 | removed Sea of Japan from basin mask |
html | 6ff516e | jens-daniel-mueller | 2021-03-30 | Build site. |
html | 86aee67 | jens-daniel-mueller | 2021-03-26 | Build site. |
Rmd | 96f4b3a | jens-daniel-mueller | 2021-03-26 | darker grey for landmask |
html | a5846c5 | jens-daniel-mueller | 2020-12-18 | Build site. |
Rmd | 5538466 | jens-daniel-mueller | 2020-12-18 | subsetted WOA depth levels to 33 standard depths |
html | 88967c0 | jens-daniel-mueller | 2020-12-16 | Build site. |
html | fd1a2c9 | jens-daniel-mueller | 2020-12-15 | cleaned for copying |
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Rmd | 6f2a669 | jens-daniel-mueller | 2020-12-15 | code and output cleaning |
html | 2fdd2a7 | jens-daniel-mueller | 2020-12-14 | Build site. |
html | cc07d29 | jens-daniel-mueller | 2020-12-14 | Build site. |
Rmd | 325e1fa | jens-daniel-mueller | 2020-12-14 | rebuild with new root folder |
html | 4ded3cd | jens-daniel-mueller | 2020-12-14 | Build site. |
Rmd | a09b95f | jens-daniel-mueller | 2020-12-14 | rebuild with new root folder |
html | 474daac | jens-daniel-mueller | 2020-12-12 | Build site. |
Rmd | 53d8356 | jens-daniel-mueller | 2020-12-12 | removed basinmask issues |
html | 5c773fa | jens-daniel-mueller | 2020-12-11 | Build site. |
html | ae7aa2e | jens-daniel-mueller | 2020-12-11 | Build site. |
Rmd | ec6f803 | jens-daniel-mueller | 2020-12-11 | apply only lat max but not basinmak |
html | 914159f | jens-daniel-mueller | 2020-12-11 | Build site. |
Rmd | 30eb59a | jens-daniel-mueller | 2020-12-11 | created basin masks for analysis |
html | 9c5d86d | jens-daniel-mueller | 2020-12-11 | Build site. |
Rmd | 8a8db38 | jens-daniel-mueller | 2020-12-11 | renamed tem to temp |
html | 999cd9d | jens-daniel-mueller | 2020-12-02 | Build site. |
html | e28cc90 | jens-daniel-mueller | 2020-11-30 | Build site. |
Rmd | cd676e8 | jens-daniel-mueller | 2020-11-30 | created global parameterization file params_global.rds |
html | 825309e | jens-daniel-mueller | 2020-11-27 | Build site. |
Rmd | 4dd5bda | jens-daniel-mueller | 2020-11-27 | correct source link, basinmask and plotting function |
html | 58359ac | jens-daniel-mueller | 2020-11-27 | Build site. |
Rmd | 2f37595 | jens-daniel-mueller | 2020-11-27 | first rebuild after splitting the preprocessing part |
Rmd | cb7a9ca | jens-daniel-mueller | 2020-11-27 | linked to local paths on server |
Rmd | 92e10aa | Jens Müller | 2020-11-27 | Initial commit |
html | 92e10aa | Jens Müller | 2020-11-27 | Initial commit |
Copied from the WOA FAQ website, the file naming conventions is:
PREF_DDDD_VTTFFGG.EXT, where:
Short description of two statistical fields in WOA
Here, we use
According to the WOA18 documentation document:
What are the units for temperature and salinity in the WOA18?
In situ temperatures used for WOA18 are not converted from their original scale, so there is a mix of IPTS-48, IPTS-68, and ITS-90 (and pre IPTS-48 temperatures). The differences between scales are small (on the order of 0.01°C) and should not have much effect on the climatological means, except, possibly at very deep depths. Values for salinity are on the Practical salinity scale (PSS-78). Pre-1978 salinity values converted from conductivity may have used a different salinity scale. Pre-conductivity salinities use the Knudsen method.
# temperature
WOA18_temp <- tidync(paste(
path_woa2018,
"temperature/decav/1.00/woa18_decav_t00_01.nc",
sep = ""
))
WOA18_temp_tibble <- WOA18_temp %>%
hyper_tibble()
WOA18_temp_tibble <- WOA18_temp_tibble %>%
select(temp = t_an, lon, lat, depth) %>%
drop_na() %>%
mutate(lon = if_else(lon < 20, lon + 360, lon))
# salinity
WOA18_sal <- tidync(paste(
path_woa2018,
"salinity/decav/1.00/woa18_decav_s00_01.nc",
sep = ""
))
WOA18_sal_tibble <- WOA18_sal %>% hyper_tibble()
WOA18_sal_tibble <- WOA18_sal_tibble %>%
select(sal = s_an, lon, lat, depth) %>%
drop_na() %>%
mutate(lon = if_else(lon < 20, lon + 360, lon))
rm(WOA18_sal, WOA18_temp)
WOA18_sal_temp <- full_join(WOA18_sal_tibble, WOA18_temp_tibble)
rm(WOA18_sal_tibble, WOA18_temp_tibble)
# use only three basin to assign general basin mask
# ie this is not specific to the MLR fitting
basinmask <- basinmask %>%
filter(MLR_basins == "2") %>%
select(lat, lon, basin_AIP)
# restrict predictor fields to basin mask grid
WOA18_sal_temp <- inner_join(WOA18_sal_temp, basinmask)
WOA18_sal_temp <- WOA18_sal_temp %>%
filter(depth %in% params_global$depth_levels_33)
Potential temperature is calculated as in input variable for the neutral density calculation.
WOA18_sal_temp <- WOA18_sal_temp %>%
mutate(THETA = swTheta(salinity = sal,
temperature = temp,
pressure = depth,
referencePressure = 0,
longitude = lon - 180,
latitude = lat))
Example profile from North Atlantic Ocean.
WOA18_sal_temp %>%
filter(lat == params_global$lat_Atl_profile,
lon == params_global$lon_Atl_section) %>%
ggplot() +
geom_line(aes(temp, depth, col = "insitu")) +
geom_point(aes(temp, depth, col = "insitu")) +
geom_line(aes(THETA, depth, col = "theta")) +
geom_point(aes(THETA, depth, col = "theta")) +
scale_y_reverse() +
scale_color_brewer(palette = "Dark2", name = "Scale")
Version | Author | Date |
---|---|---|
86aee67 | jens-daniel-mueller | 2021-03-26 |
a5846c5 | jens-daniel-mueller | 2020-12-18 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
ae7aa2e | jens-daniel-mueller | 2020-12-11 |
914159f | jens-daniel-mueller | 2020-12-11 |
9c5d86d | jens-daniel-mueller | 2020-12-11 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
p_section_global(
df = WOA18_sal_temp,
var = "THETA")
Version | Author | Date |
---|---|---|
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
a5846c5 | jens-daniel-mueller | 2020-12-18 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
914159f | jens-daniel-mueller | 2020-12-11 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
Neutral density gamma was calculated with a Python script provided by Serazin et al (2011), which performs a polynomial approximation of the original gamma calculation.
# calculate pressure from depth
WOA18_sal_temp <- WOA18_sal_temp %>%
mutate(CTDPRS = gsw_p_from_z(-depth,
lat))
# rename variables according to python script
WOA18_sal_temp_gamma_prep <- WOA18_sal_temp %>%
rename(LATITUDE = lat,
LONGITUDE = lon,
SALNTY = sal)
# load python scripts
source_python(paste(
path_functions,
"python_scripts/Gamma_GLODAP_python.py",
sep = ""
))
# calculate gamma
WOA18_sal_temp_gamma_calc <-
calculate_gamma(WOA18_sal_temp_gamma_prep)
# reverse variable naming
WOA18_sal_temp <- WOA18_sal_temp_gamma_calc %>%
select(-c(CTDPRS, THETA)) %>%
rename(
lat = LATITUDE,
lon = LONGITUDE,
sal = SALNTY,
gamma = GAMMA
)
WOA18_sal_temp <- as_tibble(WOA18_sal_temp)
rm(WOA18_sal_temp_gamma_calc, WOA18_sal_temp_gamma_prep)
# calculate pressure from depth
WOA18_sal_temp_dens <- WOA18_sal_temp %>%
mutate(
p = gsw_p_from_z(z = -depth, latitude = lat),
CT = gsw_CT_from_t(SA = sal, t = temp, p = p),
sigma0 = gsw_sigma0(SA = sal, CT = CT),
sigma1 = gsw_sigma1(SA = sal, CT = CT),
sigma4 = gsw_sigma4(SA = sal, CT = CT),
rho = gsw_rho(SA = sal, CT = CT, p = p) -1000
)
WOA18_sal_temp_dens <- WOA18_sal_temp_dens %>%
select(lon, lat, depth, basin_AIP,
gamma, starts_with("sigma"), rho) %>%
pivot_longer(gamma:rho,
names_to = "estimate",
values_to = "value")
WOA18_sal_temp_dens %>%
group_split(estimate) %>%
# head(1) %>%
map(~ p_map_climatology(df = .x,
var = "value",
title_text = unique(.x$estimate)))
[[1]]
[[2]]
[[3]]
[[4]]
[[5]]
WOA18_sal_temp_dens %>%
group_split(estimate) %>%
# head(1) %>%
map(~ p_section_global(df = .x,
var = "value",
title_text = unique(.x$estimate)))
[[1]]
Version | Author | Date |
---|---|---|
8aa0950 | jens-daniel-mueller | 2022-04-02 |
[[2]]
Version | Author | Date |
---|---|---|
8aa0950 | jens-daniel-mueller | 2022-04-02 |
[[3]]
Version | Author | Date |
---|---|---|
8aa0950 | jens-daniel-mueller | 2022-04-02 |
[[4]]
Version | Author | Date |
---|---|---|
8aa0950 | jens-daniel-mueller | 2022-04-02 |
[[5]]
Version | Author | Date |
---|---|---|
8aa0950 | jens-daniel-mueller | 2022-04-02 |
WOA18_sal_temp_dens <- WOA18_sal_temp_dens %>%
arrange(estimate) %>%
group_by(lon, lat, depth) %>%
mutate(delta_value = value - first(value),
delta_estimate = paste(estimate, first(estimate), sep = "-")) %>%
ungroup()
WOA18_sal_temp_dens %>%
group_split(delta_estimate) %>%
# head(2) %>%
map( ~ p_map_climatology(
df = .x,
var = "delta_value",
col = "divergent",
title_text = unique(.x$delta_estimate)
))
[[1]]
[[2]]
[[3]]
[[4]]
[[5]]
WOA18_sal_temp_dens %>%
filter(delta_estimate != "gamma-gamma") %>%
group_split(delta_estimate) %>%
# tail(1) %>%
map( ~ p_section_global(
df = .x,
var = "delta_value",
col = "divergent",
subtitle_text = unique(.x$delta_estimate)
))
[[1]]
[[2]]
[[3]]
[[4]]
rm(WOA18_sal_temp_dens)
WOA18_sal_temp %>%
write_csv(paste(path_preprocessing,
"WOA18_sal_temp.csv",
sep = ""))
Below, following subsets of the climatologies are plotted for all relevant parameters:
p_map_climatology(
df = WOA18_sal_temp,
var = "temp")
Version | Author | Date |
---|---|---|
9451c4b | jens-daniel-mueller | 2022-04-06 |
7e94d73 | jens-daniel-mueller | 2022-04-06 |
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
02a01ef | jens-daniel-mueller | 2022-03-10 |
fecc329 | jens-daniel-mueller | 2022-02-25 |
2a50fa9 | jens-daniel-mueller | 2021-10-28 |
0ef91d5 | jens-daniel-mueller | 2021-05-12 |
ace484d | jens-daniel-mueller | 2021-05-12 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
cc07d29 | jens-daniel-mueller | 2020-12-14 |
ae7aa2e | jens-daniel-mueller | 2020-12-11 |
914159f | jens-daniel-mueller | 2020-12-11 |
9c5d86d | jens-daniel-mueller | 2020-12-11 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
p_section_global(
df = WOA18_sal_temp,
var = "temp")
Version | Author | Date |
---|---|---|
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
a5846c5 | jens-daniel-mueller | 2020-12-18 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
914159f | jens-daniel-mueller | 2020-12-11 |
9c5d86d | jens-daniel-mueller | 2020-12-11 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
p_map_climatology(
df = WOA18_sal_temp,
var = "sal")
Version | Author | Date |
---|---|---|
9451c4b | jens-daniel-mueller | 2022-04-06 |
7e94d73 | jens-daniel-mueller | 2022-04-06 |
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
02a01ef | jens-daniel-mueller | 2022-03-10 |
fecc329 | jens-daniel-mueller | 2022-02-25 |
2a50fa9 | jens-daniel-mueller | 2021-10-28 |
0ef91d5 | jens-daniel-mueller | 2021-05-12 |
ace484d | jens-daniel-mueller | 2021-05-12 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
cc07d29 | jens-daniel-mueller | 2020-12-14 |
ae7aa2e | jens-daniel-mueller | 2020-12-11 |
914159f | jens-daniel-mueller | 2020-12-11 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
p_section_global(
df = WOA18_sal_temp,
var = "sal")
Version | Author | Date |
---|---|---|
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
a5846c5 | jens-daniel-mueller | 2020-12-18 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
914159f | jens-daniel-mueller | 2020-12-11 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
p_map_climatology(
df = WOA18_sal_temp,
var = "gamma")
Version | Author | Date |
---|---|---|
9451c4b | jens-daniel-mueller | 2022-04-06 |
7e94d73 | jens-daniel-mueller | 2022-04-06 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
02a01ef | jens-daniel-mueller | 2022-03-10 |
fecc329 | jens-daniel-mueller | 2022-02-25 |
2a50fa9 | jens-daniel-mueller | 2021-10-28 |
0ef91d5 | jens-daniel-mueller | 2021-05-12 |
ace484d | jens-daniel-mueller | 2021-05-12 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
cc07d29 | jens-daniel-mueller | 2020-12-14 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
p_section_global(
df = WOA18_sal_temp,
var = "gamma")
Version | Author | Date |
---|---|---|
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
a5846c5 | jens-daniel-mueller | 2020-12-18 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
cc07d29 | jens-daniel-mueller | 2020-12-14 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
Data are read-in looping over all relevant files, thereby reproducing the same subsetting steps as applied above to the salintity and temperature fields.
# Keep grid cells of WOA18 sal temp data set, to join with
WOA18_nuts_O2 <-
WOA18_sal_temp %>%
select(lon, lat, depth)
rm(WOA18_sal_temp)
# create file list
file_list <- c(
paste(path_woa2018, "phosphate/all/1.00/woa18_all_p00_01.nc", sep = ""),
paste(path_woa2018, "nitrate/all/1.00/woa18_all_n00_01.nc", sep = ""),
paste(path_woa2018, "silicate/all/1.00/woa18_all_i00_01.nc", sep = ""),
paste(path_woa2018, "oxygen/all/1.00/woa18_all_o00_01.nc", sep = ""),
paste(path_woa2018, "AOU/all/1.00/woa18_all_A00_01.nc", sep = "")
)
# read, plot and join data sets while looping over file list
for (file in file_list) {
# file <- file_list[1]
# open file
WOA18 <- tidync(file)
WOA18_tibble <- WOA18 %>% hyper_tibble()
# extract parameter name
parameter <- str_split(file, pattern = "00_", simplify = TRUE)[1]
parameter <- str_split(parameter, pattern = "all_", simplify = TRUE)[2]
parameter <- paste(parameter, "_an", sep = "")
print(file)
WOA18_tibble <- WOA18_tibble %>%
select(all_of(parameter),
lon, lat, depth) %>%
mutate(lon = if_else(lon < 20, lon + 360, lon))
# apply general basin mask
WOA18_tibble <- inner_join(WOA18_tibble, basinmask)
# subset depth levels
WOA18_tibble <- WOA18_tibble %>%
filter(depth %in% params_global$depth_levels_33)
# join with previous WOA data and keep only rows in existing data frame
# this is equal to applying the basinmask
WOA18_nuts_O2 <- left_join(
x = WOA18_nuts_O2,
y = WOA18_tibble)
# plot maps
print(
p_map_climatology(
df = WOA18_nuts_O2,
var = parameter)
)
# plot sections
print(p_section_global(
df = WOA18_nuts_O2,
var = parameter
))
}
[1] "/nfs/kryo/work/updata/woa2018/phosphate/all/1.00/woa18_all_p00_01.nc"
Version | Author | Date |
---|---|---|
9451c4b | jens-daniel-mueller | 2022-04-06 |
7e94d73 | jens-daniel-mueller | 2022-04-06 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
02a01ef | jens-daniel-mueller | 2022-03-10 |
fecc329 | jens-daniel-mueller | 2022-02-25 |
2a50fa9 | jens-daniel-mueller | 2021-10-28 |
0ef91d5 | jens-daniel-mueller | 2021-05-12 |
ace484d | jens-daniel-mueller | 2021-05-12 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
cc07d29 | jens-daniel-mueller | 2020-12-14 |
ae7aa2e | jens-daniel-mueller | 2020-12-11 |
914159f | jens-daniel-mueller | 2020-12-11 |
825309e | jens-daniel-mueller | 2020-11-27 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
Version | Author | Date |
---|---|---|
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
a5846c5 | jens-daniel-mueller | 2020-12-18 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
914159f | jens-daniel-mueller | 2020-12-11 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
[1] "/nfs/kryo/work/updata/woa2018/nitrate/all/1.00/woa18_all_n00_01.nc"
Version | Author | Date |
---|---|---|
9451c4b | jens-daniel-mueller | 2022-04-06 |
7e94d73 | jens-daniel-mueller | 2022-04-06 |
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
02a01ef | jens-daniel-mueller | 2022-03-10 |
fecc329 | jens-daniel-mueller | 2022-02-25 |
2a50fa9 | jens-daniel-mueller | 2021-10-28 |
0ef91d5 | jens-daniel-mueller | 2021-05-12 |
ace484d | jens-daniel-mueller | 2021-05-12 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
cc07d29 | jens-daniel-mueller | 2020-12-14 |
ae7aa2e | jens-daniel-mueller | 2020-12-11 |
914159f | jens-daniel-mueller | 2020-12-11 |
825309e | jens-daniel-mueller | 2020-11-27 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
Version | Author | Date |
---|---|---|
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
a5846c5 | jens-daniel-mueller | 2020-12-18 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
914159f | jens-daniel-mueller | 2020-12-11 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
[1] "/nfs/kryo/work/updata/woa2018/silicate/all/1.00/woa18_all_i00_01.nc"
Version | Author | Date |
---|---|---|
9451c4b | jens-daniel-mueller | 2022-04-06 |
7e94d73 | jens-daniel-mueller | 2022-04-06 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
02a01ef | jens-daniel-mueller | 2022-03-10 |
fecc329 | jens-daniel-mueller | 2022-02-25 |
2a50fa9 | jens-daniel-mueller | 2021-10-28 |
0ef91d5 | jens-daniel-mueller | 2021-05-12 |
ace484d | jens-daniel-mueller | 2021-05-12 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
cc07d29 | jens-daniel-mueller | 2020-12-14 |
ae7aa2e | jens-daniel-mueller | 2020-12-11 |
914159f | jens-daniel-mueller | 2020-12-11 |
825309e | jens-daniel-mueller | 2020-11-27 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
Version | Author | Date |
---|---|---|
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
a5846c5 | jens-daniel-mueller | 2020-12-18 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
914159f | jens-daniel-mueller | 2020-12-11 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
[1] "/nfs/kryo/work/updata/woa2018/oxygen/all/1.00/woa18_all_o00_01.nc"
Version | Author | Date |
---|---|---|
9451c4b | jens-daniel-mueller | 2022-04-06 |
7e94d73 | jens-daniel-mueller | 2022-04-06 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
02a01ef | jens-daniel-mueller | 2022-03-10 |
fecc329 | jens-daniel-mueller | 2022-02-25 |
2a50fa9 | jens-daniel-mueller | 2021-10-28 |
0ef91d5 | jens-daniel-mueller | 2021-05-12 |
ace484d | jens-daniel-mueller | 2021-05-12 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
cc07d29 | jens-daniel-mueller | 2020-12-14 |
ae7aa2e | jens-daniel-mueller | 2020-12-11 |
914159f | jens-daniel-mueller | 2020-12-11 |
825309e | jens-daniel-mueller | 2020-11-27 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
Version | Author | Date |
---|---|---|
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
a5846c5 | jens-daniel-mueller | 2020-12-18 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
914159f | jens-daniel-mueller | 2020-12-11 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
[1] "/nfs/kryo/work/updata/woa2018/AOU/all/1.00/woa18_all_A00_01.nc"
Version | Author | Date |
---|---|---|
9451c4b | jens-daniel-mueller | 2022-04-06 |
7e94d73 | jens-daniel-mueller | 2022-04-06 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
02a01ef | jens-daniel-mueller | 2022-03-10 |
fecc329 | jens-daniel-mueller | 2022-02-25 |
2a50fa9 | jens-daniel-mueller | 2021-10-28 |
0ef91d5 | jens-daniel-mueller | 2021-05-12 |
ace484d | jens-daniel-mueller | 2021-05-12 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
cc07d29 | jens-daniel-mueller | 2020-12-14 |
ae7aa2e | jens-daniel-mueller | 2020-12-11 |
914159f | jens-daniel-mueller | 2020-12-11 |
825309e | jens-daniel-mueller | 2020-11-27 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
Version | Author | Date |
---|---|---|
f088f55 | jens-daniel-mueller | 2022-04-01 |
dde77eb | jens-daniel-mueller | 2022-04-01 |
86aee67 | jens-daniel-mueller | 2021-03-26 |
a5846c5 | jens-daniel-mueller | 2020-12-18 |
88967c0 | jens-daniel-mueller | 2020-12-16 |
fd1a2c9 | jens-daniel-mueller | 2020-12-15 |
914159f | jens-daniel-mueller | 2020-12-11 |
58359ac | jens-daniel-mueller | 2020-11-27 |
92e10aa | Jens Müller | 2020-11-27 |
WOA18_nuts_O2 %>%
rename(phosphate = p_an,
nitrate = n_an,
silicate = i_an,
oxygen = o_an,
aou = A_an) %>%
write_csv(paste(path_preprocessing,
"WOA18_nuts_O2.csv",
sep = ""))
sessionInfo()
R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.3
Matrix products: default
BLAS: /usr/local/R-4.1.2/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.1.2/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] stars_0.5-5 sf_1.0-5 abind_1.4-5 geosphere_1.5-14
[5] oce_1.5-0 gsw_1.0-6 reticulate_1.23 tidync_0.2.4
[9] geomtextpath_0.1.0 colorspace_2.0-2 marelac_2.1.10 shape_1.4.6
[13] ggforce_0.3.3 metR_0.11.0 scico_1.3.0 patchwork_1.1.1
[17] collapse_1.7.0 forcats_0.5.1 stringr_1.4.0 dplyr_1.0.7
[21] purrr_0.3.4 readr_2.1.1 tidyr_1.1.4 tibble_3.1.6
[25] ggplot2_3.3.5 tidyverse_1.3.1 workflowr_1.7.0
loaded via a namespace (and not attached):
[1] ellipsis_0.3.2 class_7.3-20 rprojroot_2.0.2 fs_1.5.2
[5] rstudioapi_0.13 proxy_0.4-26 farver_2.1.0 bit64_4.0.5
[9] fansi_1.0.2 lubridate_1.8.0 xml2_1.3.3 ncdf4_1.19
[13] knitr_1.37 polyclip_1.10-0 jsonlite_1.7.3 broom_0.7.11
[17] dbplyr_2.1.1 png_0.1-7 compiler_4.1.2 httr_1.4.2
[21] backports_1.4.1 assertthat_0.2.1 Matrix_1.4-0 fastmap_1.1.0
[25] cli_3.1.1 later_1.3.0 tweenr_1.0.2 htmltools_0.5.2
[29] tools_4.1.2 gtable_0.3.0 glue_1.6.0 rappdirs_0.3.3
[33] Rcpp_1.0.8 cellranger_1.1.0 jquerylib_0.1.4 RNetCDF_2.5-2
[37] vctrs_0.3.8 lwgeom_0.2-8 xfun_0.29 ps_1.6.0
[41] rvest_1.0.2 lifecycle_1.0.1 ncmeta_0.3.0 getPass_0.2-2
[45] MASS_7.3-55 scales_1.1.1 vroom_1.5.7 hms_1.1.1
[49] promises_1.2.0.1 parallel_4.1.2 RColorBrewer_1.1-2 yaml_2.2.1
[53] sass_0.4.0 stringi_1.7.6 highr_0.9 e1071_1.7-9
[57] checkmate_2.0.0 rlang_1.0.2 pkgconfig_2.0.3 systemfonts_1.0.3
[61] evaluate_0.14 lattice_0.20-45 SolveSAPHE_2.1.0 labeling_0.4.2
[65] bit_4.0.4 processx_3.5.2 tidyselect_1.1.1 here_1.0.1
[69] seacarb_3.3.0 magrittr_2.0.1 R6_2.5.1 generics_0.1.1
[73] DBI_1.1.2 pillar_1.6.4 haven_2.4.3 whisker_0.4
[77] withr_2.4.3 units_0.7-2 sp_1.4-6 modelr_0.1.8
[81] crayon_1.4.2 KernSmooth_2.23-20 utf8_1.2.2 tzdb_0.2.0
[85] rmarkdown_2.11 isoband_0.2.5 grid_4.1.2 readxl_1.3.1
[89] data.table_1.14.2 callr_3.7.0 git2r_0.29.0 reprex_2.0.1
[93] digest_0.6.29 classInt_0.4-3 httpuv_1.6.5 textshaping_0.3.6
[97] munsell_0.5.0 viridisLite_0.4.0 bslib_0.3.1