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center <- -160
boundary <- center + 180
target_crs <- paste0("+proj=robin +over +lon_0=", center)
# target_crs <- paste0("+proj=eqearth +over +lon_0=", center)
# target_crs <- paste0("+proj=eqearth +lon_0=", center)
# target_crs <- paste0("+proj=igh_o +lon_0=", center)

worldmap <- ne_countries(scale = 'small',
                         type = 'map_units',
                         returnclass = 'sf')

worldmap <- worldmap %>% st_break_antimeridian(lon_0 = center)
worldmap_trans <- st_transform(worldmap, crs = target_crs)

# ggplot() +
#   geom_sf(data = worldmap_trans)

coastline <- ne_coastline(scale = 'small', returnclass = "sf")
coastline <- st_break_antimeridian(coastline, lon_0 = 200)
coastline_trans <- st_transform(coastline, crs = target_crs)

# ggplot() +
#   geom_sf(data = worldmap_trans, fill = "grey", col="grey") +
#   geom_sf(data = coastline_trans)


bbox <- st_bbox(c(xmin = -180, xmax = 180, ymax = 65, ymin = -78), crs = st_crs(4326))
bbox <- st_as_sfc(bbox)
bbox_trans <- st_break_antimeridian(bbox, lon_0 = center)

bbox_graticules <- st_graticule(
  x = bbox_trans,
  crs = st_crs(bbox_trans),
  datum = st_crs(bbox_trans),
  lon = c(20, 20.001),
  lat = c(-78,65),
  ndiscr = 1e3,
  margin = 0.001
)

bbox_graticules_trans <- st_transform(bbox_graticules, crs = target_crs)
rm(worldmap, coastline, bbox, bbox_trans)

# ggplot() +
#   geom_sf(data = worldmap_trans, fill = "grey", col="grey") +
#   geom_sf(data = coastline_trans) +
#   geom_sf(data = bbox_graticules_trans)

lat_lim <- ext(bbox_graticules_trans)[c(3,4)]*1.002
lon_lim <- ext(bbox_graticules_trans)[c(1,2)]*1.005

# ggplot() +
#   geom_sf(data = worldmap_trans, fill = "grey90", col = "grey90") +
#   geom_sf(data = coastline_trans) +
#   geom_sf(data = bbox_graticules_trans, linewidth = 1) +
#   coord_sf(crs = target_crs,
#            ylim = lat_lim,
#            xlim = lon_lim,
#            expand = FALSE) +
#   theme(
#     panel.border = element_blank(),
#     axis.text = element_blank(),
#     axis.ticks = element_blank()
#   )

latitude_graticules <- st_graticule(
  x = bbox_graticules,
  crs = st_crs(bbox_graticules),
  datum = st_crs(bbox_graticules),
  lon = c(20, 20.001),
  lat = c(-60,-30,0,30,60),
  ndiscr = 1e3,
  margin = 0.001
)

latitude_graticules_trans <- st_transform(latitude_graticules, crs = target_crs)

latitude_labels <- data.frame(lat_label = c("60°N","30°N","Eq.","30°S","60°S"),
                 lat = c(60,30,0,-30,-60)-4, lon = c(35)-c(0,2,4,2,0))

latitude_labels <- st_as_sf(x = latitude_labels,
               coords = c("lon", "lat"),
               crs = "+proj=longlat")

latitude_labels_trans <- st_transform(latitude_labels, crs = target_crs)

# ggplot() +
#   geom_sf(data = worldmap_trans, fill = "grey", col = "grey") +
#   geom_sf(data = coastline_trans) +
#   geom_sf(data = bbox_graticules_trans) +
#   geom_sf(data = latitude_graticules_trans,
#           col = "grey60",
#           linewidth = 0.2) +
#   geom_sf_text(data = latitude_labels_trans,
#                aes(label = lat_label),
#                size = 3,
#                col = "grey60")

Read data

path_FESOM <-
  "/net/kryo/work/loher/GlobalMarineHeatwaves/AWI_FESOM2/"
library(ncdf4)

nc <-
  nc_open(paste0(
    path_FESOM,
    "dissic_FESOM2_REcoM_A_1_gr_1980-2023_v20220716.nc"
  ))

print(nc)
FESOM_files <- list.files(path = path_FESOM)

FESOM_files <-
  FESOM_files[FESOM_files %>% str_detect(c(
    "dissic_|no3|thetao|talk_|so_"
  ))]


dates <- seq(ymd("1980-01-15"), ymd("2023-12-15"), "months")


for (i_FESOM_files in FESOM_files) {
  
  # i_FESOM_files <- FESOM_files[1]
  
  i_pco2_product_interior <-
    read_mdim(paste0(path_FESOM,
                     i_FESOM_files))
  
  i_pco2_product_interior <-
    i_pco2_product_interior %>%
    filter(Depth <= 500)
  
  i_pco2_product_interior <- 
    st_set_dimensions(i_pco2_product_interior, 4, values = dates, names = "time")

  if (exists("pco2_product_interior")) {
    pco2_product_interior <-
      c(pco2_product_interior,
                i_pco2_product_interior)
  }
  
  if (!exists("pco2_product_interior")) {
    pco2_product_interior <- i_pco2_product_interior
  }
  
}

rm(FESOM_files, i_FESOM_files, i_pco2_product_interior)
# rm(pco2_product_interior)

pco2_product_interior <- pco2_product_interior %>%
  as_tibble()

pco2_product_interior <- pco2_product_interior %>%
  drop_na()
gc()
             used    (Mb)  gc trigger    (Mb)    max used    (Mb)
Ncells    2875923   153.6     5463885   291.9     3988560   213.1
Vcells 3987874448 30425.1 11791951930 89965.5 10709865969 81709.8
pco2_product_interior <-
  pco2_product_interior %>%
  rename(lat = Lat,
         lon = Lon,
         depth = Depth)

pco2_product_interior <-
  pco2_product_interior %>%
  mutate(
    lon = if_else(lon < 20, lon + 360, lon),
    no3 = no3 * 1.025e3,
    dissic = dissic * 1.025e3,
    talk = talk * 1.025e3,
    sdissic = dissic / so * 35,
    stalk = talk / so * 35,
    sdissic_stalk = sdissic - stalk,
    cstar = dissic  - (117/16 * no3)  - 0.5 * (talk + no3)
  )
gc()
             used    (Mb)  gc trigger    (Mb)    max used    (Mb)
Ncells    2905542   155.2     5463885   291.9     3988560   213.1
Vcells 5757876697 43929.2 11791951930 89965.5 10709865969 81709.8
pco2_product_surf <-
  pco2_product_interior %>%
  filter(depth == min(depth))

gc()
             used    (Mb)  gc trigger    (Mb)    max used    (Mb)
Ncells    2907746   155.3     5463885   291.9     3988560   213.1
Vcells 6045496772 46123.5 11791951930 89965.5 10709865969 81709.8
FESOM_files <- list.files(path = path_FESOM)

FESOM_files <-
  FESOM_files[FESOM_files %>% str_detect(c(
    "alpha|chlos|fgco2|Kw|mld|fCO2atm|sfco2|sos|tos|intpp|dissicos|talkos"
  ))]

for (i_FESOM_files in FESOM_files) {
  
  # i_FESOM_files <- FESOM_files[1]
  
  i_pco2_product <-
    read_ncdf(paste0(path_FESOM,
                     i_FESOM_files))
  
  i_pco2_product <- 
    st_set_dimensions(i_pco2_product, 3, values = dates, names = "time")
  
  if (exists("pco2_product")) {
    pco2_product <-
      c(pco2_product,
                i_pco2_product)
  }
  
  if (!exists("pco2_product")) {
    pco2_product <- i_pco2_product
  }
  
}

rm(FESOM_files, i_FESOM_files, i_pco2_product)
# rm(pco2_product)

pco2_product <- pco2_product %>%
  as_tibble()


pco2_product <-
  pco2_product %>%
  rename(lat = Lat,
         lon = Lon) %>% 
  mutate(year = year(time),
         month = month(time))

pco2_product <-
  pco2_product %>%
  rename(sol = alpha,
         chl = chlos,
         kw = Kw,
         atm_fco2 = fCO2atm,
         salinity = sos,
         temperature = tos,
         dissic = dissicos,
         talk = talkos) %>%
  mutate(
    lon = if_else(lon < 20, lon + 360, lon),
    chl = log10(chl * 1e6),
    intpp = intpp * 60 * 60 * 24 * 365,
    kw = kw * 60 * 60 * 24 * 365,
    mld = -mld,
    sol = sol * 1.025e3 * 1e-6,
    fgco2 = -fgco2 * 60 * 60 * 24 * 365,
    dfco2 = sfco2 - atm_fco2,
    dissic = dissic * 1.025e3,
    talk = talk * 1.025e3,
    sdissic = dissic / salinity * 35,
    stalk = talk / salinity * 35,
    sdissic_stalk = sdissic - stalk
  )

pco2_product <-
  pco2_product %>% 
  mutate(kw_sol = kw * sol)

pco2_product <- 
  full_join(pco2_product,
            pco2_product_surf %>% select(-c(depth, thetao, dissic, talk, cstar, sdissic, stalk, sdissic_stalk)))

rm(pco2_product_surf)
gc()
             used    (Mb)  gc trigger    (Mb)    max used    (Mb)
Ncells    2947202   157.4     5463885   291.9     5463885   291.9
Vcells 6579110406 50194.7 11791951930 89965.5 10709865969 81709.8
# pco2_product %>% 
#   filter(time == max(time)) %>% 
#   select(lon, lat, temperature, sol, dissic) %>% 
#   ggplot(aes(lon, lat, fill = sol)) +
#   geom_tile() +
#   scale_fill_viridis_c()
pCO2_product_preprocessing <-
  knitr::knit_expand(file = here::here("analysis/child/pCO2_product_preprocessing.Rmd"),
                     product_name = "FESOM-REcoM")

Preprocessing

# model <- TRUE
model <- str_detect('FESOM-REcoM', "FESOM-REcoM|ETHZ-CESM")

Load masks

biome_mask <-
  read_rds(here::here("data/biome_mask.rds"))

region_mask <-
  read_rds(here::here("data/region_mask.rds"))

map <-
  read_rds(here::here("data/map.rds"))

key_biomes <-
  read_rds(here::here("data/key_biomes.rds"))

Define labels and breaks

labels_breaks <- function(i_name) {
  
  if (i_name == "dco2") {
    i_legend_title <- "ΔpCO<sub>2</sub><br>(µatm)"
  }
  
  if (i_name == "dfco2") {
    i_legend_title <- "ΔfCO<sub>2</sub><br>(µatm)"
  }
  
  if (i_name == "atm_co2") {
    i_legend_title <- "pCO<sub>2,atm</sub><br>(µatm)"
  }
  
  if (i_name == "atm_fco2") {
    i_legend_title <- "fCO<sub>2,atm</sub><br>(µatm)"
  }
  
  if (i_name == "sol") {
    i_legend_title <- "K<sub>0</sub><br>(mol m<sup>-3</sup> µatm<sup>-1</sup>)"
  }
  
  if (i_name == "kw") {
    i_legend_title <- "k<sub>w</sub><br>(m yr<sup>-1</sup>)"
  }
  
  if (i_name == "kw_sol") {
    i_legend_title <- "k<sub>w</sub> K<sub>0</sub><br>(mol yr<sup>-1</sup> m<sup>-2</sup> µatm<sup>-1</sup>)"
  }
  
  if (i_name == "spco2") {
    i_legend_title <- "pCO<sub>2,ocean</sub><br>(µatm)"
  }
  
  if (i_name == "sfco2") {
    i_legend_title <- "fCO<sub>2,ocean</sub><br>(µatm)"
  }
  
  if (i_name == "intpp") {
    i_legend_title <- "NPP<sub>int</sub><br>(mol m<sup>-2</sup> yr<sup>-1</sup>)"
  }

  if (i_name == "no3") {
    i_legend_title <- "NO<sub>3</sub><br>(μmol kg<sup>-1</sup>)"
  }

  if (i_name == "o2") {
    i_legend_title <- "O<sub>2</sub><br>(μmol kg<sup>-1</sup>)"
  }

  if (i_name == "dissic") {
    i_legend_title <- "DIC<br>(μmol kg<sup>-1</sup>)"
  }

  if (i_name == "sdissic") {
    i_legend_title <- "sDIC<br>(μmol kg<sup>-1</sup>)"
  }

  if (i_name == "cstar") {
    i_legend_title <- "C*<br>(μmol kg<sup>-1</sup>)"
  }

  if (i_name == "talk") {
    i_legend_title <- "TA<br>(μmol kg<sup>-1</sup>)"
  }

  if (i_name == "stalk") {
    i_legend_title <- "sTA<br>(μmol kg<sup>-1</sup>)"
  }
  
  
  if (i_name == "sdissic_stalk") {
    i_legend_title <- "sDIC-sTA<br>(μmol kg<sup>-1</sup>)"
  }
  
  if (i_name == "sfco2_total") {
    i_legend_title <- "total"
  }
  
  if (i_name == "sfco2_therm") {
    i_legend_title <- "thermal"
  }
  
  if (i_name == "sfco2_nontherm") {
    i_legend_title <- "non-thermal"
  }
  
  if (i_name == "fgco2") {
    i_legend_title <- "FCO<sub>2</sub><br>(mol m<sup>-2</sup> yr<sup>-1</sup>)"
  }
  
  if (i_name == "fgco2_hov") {
    i_legend_title <- "FCO<sub>2</sub><br>(PgC deg<sup>-1</sup> yr<sup>-1</sup>)"
  }
  
  if (i_name == "fgco2_int") {
    i_legend_title <- "FCO<sub>2</sub><br>(PgC yr<sup>-1</sup>)"
  }
  
  if (i_name == "thetao") {
    i_legend_title <- "Temp.<br>(°C)"
  }
  
  if (i_name == "temperature") {
    i_legend_title <- "SST<br>(°C)"
  }
  
  if (i_name == "salinity") {
    i_legend_title <- "SSS"
  }
  
  if (i_name == "so") {
    i_legend_title <- "salinity"
  }
  
  if (i_name == "chl") {
    i_legend_title <- "lg(Chl-a)<br>(lg(mg m<sup>-3</sup>))"
  }
  
  if (i_name == "mld") {
    i_legend_title <- "MLD<br>(m)"
  }
  
  if (i_name == "press") {
    i_legend_title <- "pressure<sub>atm</sub><br>(Pa)"
  }
  
  if (i_name == "wind") {
    i_legend_title <- "Wind <br>(m sec<sup>-1</sup>)"
  }
  
  if (i_name == "SSH") {
    i_legend_title <- "SSH <br>(m)"
  }
  
  if (i_name == "fice") {
    i_legend_title <- "Sea ice <br>(%)"
  }
  
    
  if (i_name == "resid_fgco2") {
    i_legend_title <-
      "Observed"
  }
    
  if (i_name == "resid_fgco2_dfco2") {
    i_legend_title <-
      "ΔfCO<sub>2</sub>"
  }
    
  if (i_name == "resid_fgco2_kw_sol") {
    i_legend_title <-
      "k<sub>w</sub> K<sub>0</sub>"
  }
    
  if (i_name == "resid_fgco2_dfco2_kw_sol") {
    i_legend_title <-
      "k<sub>w</sub> K<sub>0</sub> X ΔfCO<sub>2</sub>"
  }
    
  if (i_name == "resid_fgco2_sum") {
    i_legend_title <-
      "∑"
  }
    
  if (i_name == "resid_fgco2_offset") {
    i_legend_title <-
      "Obs. - ∑"
  }
  
  all_labels_breaks <- lst(i_legend_title)
  
  return(all_labels_breaks)
  
}

x_axis_labels <-
  c(
    "dco2" = labels_breaks("dco2")$i_legend_title,
    "dfco2" = labels_breaks("dfco2")$i_legend_title,
    "atm_co2" = labels_breaks("atm_co2")$i_legend_title,
    "atm_fco2" = labels_breaks("atm_fco2")$i_legend_title,
    "sol" = labels_breaks("sol")$i_legend_title,
    "kw" = labels_breaks("kw")$i_legend_title,
    "kw_sol" = labels_breaks("kw_sol")$i_legend_title,
    "intpp" = labels_breaks("intpp")$i_legend_title,
    "no3" = labels_breaks("no3")$i_legend_title,
    "o2" = labels_breaks("o2")$i_legend_title,
    "dissic" = labels_breaks("dissic")$i_legend_title,
    "sdissic" = labels_breaks("sdissic")$i_legend_title,
    "cstar" = labels_breaks("cstar")$i_legend_title,
    "talk" = labels_breaks("talk")$i_legend_title,
    "stalk" = labels_breaks("stalk")$i_legend_title,
    "sdissic_stalk" = labels_breaks("sdissic_stalk")$i_legend_title,
    "spco2" = labels_breaks("spco2")$i_legend_title,
    "sfco2" = labels_breaks("sfco2")$i_legend_title,
    "sfco2_total" = labels_breaks("sfco2_total")$i_legend_title,
    "sfco2_therm" = labels_breaks("sfco2_therm")$i_legend_title,
    "sfco2_nontherm" = labels_breaks("sfco2_nontherm")$i_legend_title,
    "fgco2" = labels_breaks("fgco2")$i_legend_title,
    "fgco2_hov" = labels_breaks("fgco2_hov")$i_legend_title,
    "fgco2_int" = labels_breaks("fgco2_int")$i_legend_title,
    "thetao" = labels_breaks("thetao")$i_legend_title,
    "temperature" = labels_breaks("temperature")$i_legend_title,
    "salinity" = labels_breaks("salinity")$i_legend_title,
    "so" = labels_breaks("so")$i_legend_title,
    "chl" = labels_breaks("chl")$i_legend_title,
    "mld" = labels_breaks("mld")$i_legend_title,
    "press" = labels_breaks("press")$i_legend_title,
    "wind" = labels_breaks("wind")$i_legend_title,
    "SSH" = labels_breaks("SSH")$i_legend_title,
    "fice" = labels_breaks("fice")$i_legend_title,
    "resid_fgco2" = labels_breaks("resid_fgco2")$i_legend_title,
    "resid_fgco2_dfco2" = labels_breaks("resid_fgco2_dfco2")$i_legend_title,
    "resid_fgco2_kw_sol" = labels_breaks("resid_fgco2_kw_sol")$i_legend_title,
    "resid_fgco2_dfco2_kw_sol" = labels_breaks("resid_fgco2_dfco2_kw_sol")$i_legend_title,
    "resid_fgco2_sum" = labels_breaks("resid_fgco2_sum")$i_legend_title,
    "resid_fgco2_offset" = labels_breaks("resid_fgco2_offset")$i_legend_title
  )

Analysis settings

name_quadratic_fit <- c("atm_co2", "atm_fco2", "spco2", "sfco2")

start_year <- 1990

name_divergent <- c("dco2", "dfco2", "fgco2", "fgco2_hov", "fgco2_int")

Data preprocessing

pco2_product <-
  pco2_product %>%
  filter(year >= start_year)
pco2_product_interior <-
  pco2_product_interior %>%
  filter(time >= ymd(paste0(start_year, "-01-01")))
biome_mask <- biome_mask %>% 
  mutate(area = earth_surf(lat, lon))

pco2_product <-
  full_join(pco2_product,
            biome_mask)

# set all values outside biome mask to NA

pco2_product <-
  pco2_product %>%
  mutate(across(-c(lat, lon, time, area, year, month, biome), 
                ~ if_else(is.na(biome), NA, .)))

Compuations

Maps

Biome means

pco2_product_biome_monthly_global <-
  pco2_product %>%
  filter(!is.na(fgco2)) %>%
  mutate(fgco2_int = fgco2) %>%
  mutate(biome = case_when(str_detect(biome, "SO-SPSS|SO-ICE|Arctic") ~ "Polar",
                           TRUE ~ "Global non-polar")) %>%
  filter(biome == "Global non-polar") %>%
  select(-c(lon, lat, year, month)) %>%
  group_by(time, biome) %>%
  summarise(across(-c(fgco2_int, area),
                   ~ weighted.mean(., area, na.rm = TRUE)),
            across(fgco2_int,
                   ~ sum(. * area, na.rm = TRUE) * 12.01 * 1e-15)) %>%
  ungroup()

pco2_product_biome_monthly_biome <-
  pco2_product %>%
  filter(!is.na(fgco2)) %>% 
  mutate(fgco2_int = fgco2) %>% 
  select(-c(lon, lat, year, month)) %>% 
  group_by(time, biome) %>%
  summarise(across(-c(fgco2_int, area),
                   ~ weighted.mean(., area, na.rm = TRUE)),
            across(fgco2_int,
                   ~ sum(. * area, na.rm = TRUE) * 12.01 * 1e-15)) %>%
  ungroup()


pco2_product_biome_monthly <-
  bind_rows(pco2_product_biome_monthly_global,
            pco2_product_biome_monthly_biome)

rm(
  pco2_product_biome_monthly_global,
  pco2_product_biome_monthly_biome
)


pco2_product_biome_monthly <-
  pco2_product_biome_monthly %>% 
  filter(!is.na(biome))

pco2_product_biome_monthly <-
  pco2_product_biome_monthly %>%
  mutate(year = year(time),
         month = month(time),
         .after = time)

pco2_product_biome_monthly <-
  pco2_product_biome_monthly %>%
  pivot_longer(-c(time, year, month, biome))


pco2_product_biome_annual <-
  pco2_product_biome_monthly %>%
  group_by(year, biome, name) %>%
  summarise(value = mean(value)) %>%
  ungroup()

Profiles

pco2_product_interior <- 
  left_join(
    biome_mask,
    pco2_product_interior
  )

pco2_product_profiles <- pco2_product_interior %>%
  fselect(-c(lat, lon)) %>%
  fgroup_by(biome, depth, time) %>% {
    add_vars(fgroup_vars(., "unique"),
             fmean(.,
                   w = area,
                   keep.w = FALSE,
                   keep.group_vars = FALSE))
  }

pco2_product_profiles <-
  pco2_product_profiles %>%
  mutate(
    year = year(time),
    month = month(time)
  )

gc()
             used    (Mb)  gc trigger     (Mb)    max used     (Mb)
Ncells    3030711   161.9     5463885    291.9     5463885    291.9
Vcells 7864753381 60003.4 14150422316 107959.2 14146845143 107931.9

Zonal mean sections

pco2_product_interior <- 
  left_join(
    region_mask,
    pco2_product_interior %>% select(-c(biome, area))
  )

pco2_product_zonal_mean <- pco2_product_interior %>%
  fselect(-c(lon)) %>%
  fgroup_by(region, depth, lat, time) %>% {
    add_vars(fgroup_vars(., "unique"),
             fmean(.,
                   keep.group_vars = FALSE))
  }

pco2_product_zonal_mean <-
  pco2_product_zonal_mean %>%
  mutate(
    year = year(time),
    month = month(time)
  )

gc()

rm(pco2_product_interior)
gc()

Absolute values

Hovmoeller plots

The following Hovmoeller plots show the value of each variable as provided through the pCO2 product. Hovmoeller plots are first presented as annual means, and than as monthly means.

Annual means

pco2_product_hovmoeller_annual <-
  pco2_product %>%
  mutate(fgco2_int = fgco2) %>% 
  select(-c(lon, time, month, biome)) %>%
  group_by(year, lat) %>%
  summarise(across(-c(fgco2_int, area),
                   ~ weighted.mean(., area, na.rm = TRUE)),
            across(fgco2_int,
                   ~ sum(. * area, na.rm = TRUE) * 12.01 * 1e-15)) %>%
  ungroup() %>%
  rename(fgco2_hov = fgco2_int) %>% 
  filter(fgco2_hov != 0)

pco2_product_hovmoeller_annual <-
  pco2_product_hovmoeller_annual %>%
  pivot_longer(-c(year, lat)) %>% 
  drop_na()

# pco2_product_hovmoeller_annual %>%
#   filter(!(name %in% name_divergent)) %>% 
#   group_split(name) %>%
#   # tail(5) %>%
#   map(
#     ~ ggplot(data = .x,
#              aes(year, lat, fill = value)) +
#       geom_raster() +
#       scale_fill_viridis_c(name = labels_breaks(.x %>% distinct(name))) +
#       theme(legend.title = element_markdown()) +
#       coord_cartesian(expand = 0) +
#       labs(title = "Annual means",
#            y = "Latitude") +
#       theme(axis.title.x = element_blank())
#   )
# 
# pco2_product_hovmoeller_annual %>%
#   filter(name %in% name_divergent) %>% 
#   group_split(name) %>%
#   # head(1) %>%
#   map(
#     ~ ggplot(data = .x,
#              aes(year, lat, fill = value)) +
#       geom_raster() +
#       scale_fill_gradientn(
#         colours = cmocean("curl")(100),
#         rescaler = ~ scales::rescale_mid(.x, mid = 0),
#         name = labels_breaks(.x %>% distinct(name)),
#         limits = c(quantile(.x$value, .01), quantile(.x$value, .99)),
#         oob = squish
#       ) +
#       theme(legend.title = element_markdown()) +
#       coord_cartesian(expand = 0) +
#       labs(title = "Annual means",
#            y = "Latitude") +
#       theme(axis.title.x = element_blank())
#   )

Monthly means

pco2_product_hovmoeller_monthly <-
  pco2_product %>%
  mutate(fgco2_int = fgco2) %>% 
  select(-c(lon, time, biome)) %>%
  group_by(year, month, lat) %>%
  summarise(across(-c(fgco2_int, area),
                   ~ weighted.mean(., area, na.rm = TRUE)),
            across(fgco2_int,
                   ~ sum(. * area, na.rm = TRUE) * 12.01 * 1e-15)) %>%
  ungroup() %>%
  rename(fgco2_hov = fgco2_int) %>% 
  filter(fgco2_hov != 0)


pco2_product_hovmoeller_monthly <-
  pco2_product_hovmoeller_monthly %>%
  pivot_longer(-c(year, month, lat)) %>% 
  drop_na()

pco2_product_hovmoeller_monthly <-
  pco2_product_hovmoeller_monthly %>% 
  mutate(decimal = year + (month-1) / 12)

# pco2_product_hovmoeller_monthly %>%
#   filter(!(name %in% name_divergent)) %>%
#   group_split(name) %>%
#   # head(1) %>%
#   map(
#     ~ ggplot(data = .x,
#              aes(decimal, lat, fill = value)) +
#       geom_raster() +
#       scale_fill_viridis_c(name = labels_breaks(.x %>% distinct(name))) +
#       theme(legend.title = element_markdown()) +
#       labs(title = "Monthly means",
#            y = "Latitude") +
#       coord_cartesian(expand = 0) +
#       theme(axis.title.x = element_blank())
#   )
# 
# pco2_product_hovmoeller_monthly %>%
#   filter(name %in% name_divergent) %>%
#   group_split(name) %>%
#   # head(1) %>%
#   map(
#     ~ ggplot(data = .x,
#              aes(decimal, lat, fill = value)) +
#       geom_raster() +
#       scale_fill_gradientn(
#         colours = cmocean("curl")(100),
#         rescaler = ~ scales::rescale_mid(.x, mid = 0),
#         name = labels_breaks(.x %>% distinct(name)),
#         limits = c(quantile(.x$value, .01), quantile(.x$value, .99)),
#         oob = squish
#       )+
#       theme(legend.title = element_markdown()) +
#       labs(title = "Monthly means",
#            y = "Latitude") +
#       coord_cartesian(expand = 0) +
#       theme(axis.title.x = element_blank())
#   )
rm(pco2_product)

gc()
pCO2productanalysis_2023 <-
  knitr::knit_expand(
    file = here::here("analysis/child/pCO2_product_analysis.Rmd"),
    product_name = "FESOM-REcoM",
    year_anom = 2023
  )

2023 anomalies

Functions

Anomaly detection

For the detection of anomalies at any point in time and space, we fit regression models and compare the fitted to the actual value.

We use linear regression models for all parameters, except for , which are approximated with quadratic fits.

The regression models are fitted to all data since , except 2023.

anomaly_determination <- function(df,...) {
  
  group_by <- quos(...)
  # group_by <- quos(lon, lat)
  # df <- pco2_product_map_annual
  
  # Linear regression models

  df_lm <-
    df %>%
    filter(year != 2023,
           !(name %in% name_quadratic_fit)) %>%
    drop_na() %>%
    nest(data = -c(name, !!!group_by)) %>%
    mutate(fit = map(data, ~ flm(
      formula = value ~ year, data = .x
    )))
  
  df_lm <-
    left_join(
      df_lm %>%
        unnest_wider(fit) %>%
        select(name, !!!group_by,
               intercept = `(Intercept)`,  slope = year) %>%
        mutate(intercept = as.vector(intercept),
               slope = as.vector(slope)),
      df
    ) %>%
    mutate(fit = intercept + year * slope) %>%
    select(name, !!!group_by, year, fit, value) %>%
    mutate(resid = value - fit)

  # df_lm <-
  #   df %>%
  #   filter(year != 2023,
  #          !(name %in% name_quadratic_fit)) %>%
  #   drop_na() %>% 
  #   nest(data = -c(name, !!!group_by)) %>%
  #   mutate(
  #     fit = map(data, ~ lm(value ~ year, data = .x)),
  #     tidied = map(fit, tidy),
  #     augmented = map(fit, augment)
  #   )
  # 
  # 
  # df_lm_year_anom <-
  #   full_join(
  #     df_lm %>%
  #       unnest(tidied) %>%
  #       select(name, !!!group_by, term, estimate) %>%
  #       pivot_wider(names_from = term,
  #                   values_from = estimate) %>%
  #       mutate(fit = `(Intercept)` + year * 2023) %>%
  #       select(name, !!!group_by, fit) %>%
  #       mutate(year = 2023),
  #     df %>%
  #       filter(year == 2023,
  #              !(name %in% name_quadratic_fit))
  #   ) %>%
  #   mutate(resid = value - fit)
  # 
  # 
  # df_lm <-
  #   bind_rows(
  #     df_lm %>%
  #       unnest(augmented) %>%
  #       select(name, !!!group_by, year, value, fit = .fitted, resid = .resid),
  #     df_lm_year_anom
  #   )
  # 
  # rm(df_lm_year_anom)
  
  # Quadratic regression models
  
  if(any(df %>% distinct(name) %>% pull() %in% name_quadratic_fit)){
  
  df_quadratic <-
    df %>%
    filter(year != 2023,
           name %in% name_quadratic_fit) %>%
    drop_na() %>% 
    nest(data = -c(name, !!!group_by)) %>%
    mutate(
      fit = map(data, ~ flm(
        formula = value ~ year + I(year ^ 2), data = .x))
    )
  
  df_quadratic <-
    left_join(
      df_quadratic %>%
        unnest_wider(fit) %>%
        select(name, !!!group_by,
               intercept = `(Intercept)`, slope = year, slope_squared = `I(year^2)`) %>%
        mutate(intercept = as.vector(intercept),
               slope = as.vector(slope),
               slope_squared = as.vector(slope_squared)),
      df
    ) %>%
    mutate(fit = intercept + year * slope + year^2 * slope_squared) %>%
    select(name, !!!group_by, year, fit, value) %>%
    mutate(resid = value - fit)
  
  
  # df_quadratic <-
  #   df %>%
  #   filter(year != 2023,
  #          name %in% name_quadratic_fit) %>%
  #   nest(data = -c(name, !!!group_by)) %>%
  #   mutate(
  #     fit = map(data, ~ lm(value ~ year + I(year ^ 2), data = .x)),
  #     tidied = map(fit, tidy),
  #     augmented = map(fit, augment)
  #   )
  # 
  # df_quadratic_year_anom <-
  #   full_join(
  #     df_quadratic %>%
  #       unnest(tidied) %>%
  #       select(name, !!!group_by, term, estimate) %>%
  #       pivot_wider(names_from = term,
  #                   values_from = estimate) %>%
  #       mutate(fit = `(Intercept)` + year * 2023 + `I(year^2)` * 2023 ^ 2) %>%
  #       select(name, !!!group_by, fit) %>%
  #       mutate(year = 2023),
  #     df %>%
  #       filter(year == 2023,
  #              name %in% name_quadratic_fit)
  #   ) %>%
  #   mutate(resid = value - fit)
  # 
  # 
  # df_quadratic <-
  #   bind_rows(
  #     df_quadratic %>%
  #       unnest(augmented) %>%
  #       select(name, !!!group_by, year, value, fit = .fitted, resid = .resid),
  #     df_quadratic_year_anom
  #   )
  # 
  # rm(df_quadratic_year_anom)
  
  # Join linear and quadratic regression results
  
  df_anomaly <-
    bind_rows(df_lm,
              df_quadratic)
  
  rm(df_lm,
     df_quadratic)
  
  } else{
    
    df_anomaly <- df_lm
    
    rm(df_lm)
  }
  
  df_anomaly <-
    df_anomaly %>%
    arrange(year)
  
  
  return(df_anomaly)
  
}

Seasonality plots

warm_color <- "#B84A60FF"
cold_color <- "#16877CFF"

p_season <- function(df, 
                     dim_row = "name", 
                     dim_col = "biome", 
                     title = NULL, 
                     var = "resid",
                     scales = "free_y") {
  
  p <- ggplot(data = df,
              aes(month, !!ensym(var)))
  
  if(var == "resid"){
      p <- p +
        geom_hline(yintercept = 0, linewidth =0.5)
    
  }
  
  
  
  p <- p +
      geom_path(data = . %>% filter(year != 2023),
                aes(group = as.factor(year),
                    col = as.factor(paste(min(year), max(year), sep = "-"))), 
                alpha = 0.5)+
      geom_path(data = . %>% 
                  filter(year != 2023) %>% 
                  group_by_at(vars(month, dim_col, dim_row)) %>% 
                  summarise(!!ensym(var) := mean(!!ensym(var))),
                aes(col = "Climatological\nmean"), 
                linewidth = 1) +
    scale_color_manual(values = c("grey", "black"),
                       guide = guide_legend(order = 2,
                                            reverse = TRUE)) +
    new_scale_color()+
    geom_path(data = . %>% filter(year == 2023),
                aes(col = as.factor(year)),
                linewidth = 1) +
      scale_color_manual(
        values = warm_color,
        guide = guide_legend(order = 1)
      ) +
      scale_x_continuous(breaks = seq(1, 12, 3), expand = c(0, 0)) +
      labs(title = title,
           x = "Month")
  
    if(df %>% filter(name == "fgco2") %>% nrow() > 0 & "value" %in% names(df)){
    
    df_sink <- df %>% 
      filter(year == 2023,
             name == "fgco2")
    
      p <- p +
          geom_point(data = df_sink %>% filter(value < 0),
             aes(shape = "Sink"), fill = "white") +
          geom_point(data = df_sink %>% filter(value >= 0),
             aes(shape = "Source"), fill = "white") +
        scale_shape_manual(values = c(25,24))
    
  }
  
  
  if (!(is.null(dim_col))) {
    p <- p +
      facet_grid(
        as.formula(paste(dim_row, "~", dim_col)),
        scales = scales,
        labeller = labeller(name = x_axis_labels),
        switch = "y"
      )
    
    
  } else {
    p <- p +
      facet_grid(
        as.formula(paste(dim_row, "~ .")),
        scales = "free_y",
        labeller = labeller(name = x_axis_labels),
        switch = "y"
      )
  }
  
  p <- p +
    theme(
      strip.text.y.left = element_markdown(),
      strip.placement = "outside",
      strip.background.y = element_blank(),
      axis.title.y = element_blank(),
      legend.title = element_blank()
    )
  
  p
  
}

fCO2 decomposition

fco2_decomposition <- function(df, ...) {
  
  group_by <- quos(...)
  # group_by <- quos(lon, lat, month)
  # group_by <- quos(biome, year, month)
  
  pco2_product_biome_monthly_fCO2_decomposition <-
    df %>%
    filter(name %in% c("temperature", "sfco2"))
  
  pco2_product_biome_monthly_fCO2_decomposition <-
    inner_join(
      pco2_product_biome_monthly_fCO2_decomposition %>%
        filter(name == "temperature") %>%
        select(-c(value, fit)) %>%
        pivot_wider(values_from = resid),
      pco2_product_biome_monthly_fCO2_decomposition %>%
        filter(name == "sfco2") %>%
        select(-c(value, resid)) %>%
        pivot_wider(values_from = fit)
    )
  
  pco2_product_biome_monthly_fCO2_decomposition <-
    pco2_product_biome_monthly_fCO2_decomposition %>%
    mutate(sfco2_therm = (sfco2 * exp(0.0423 * temperature)) - sfco2)
  
  
  pco2_product_biome_monthly_fCO2_decomposition <-
    inner_join(
      pco2_product_biome_monthly_fCO2_decomposition,
      df %>%
        filter(name %in% c("sfco2")) %>%
        select(-c(value, fit, name)) %>%
        rename(sfco2_total = resid)
    )
  
  
  pco2_product_biome_monthly_fCO2_decomposition <-
    pco2_product_biome_monthly_fCO2_decomposition %>%
    mutate(sfco2_nontherm = sfco2_total - sfco2_therm)
  
  pco2_product_biome_monthly_fCO2_decomposition <-
    pco2_product_biome_monthly_fCO2_decomposition %>%
    select(-c(temperature, sfco2)) %>%
    pivot_longer(starts_with("sfco2"),
                 values_to = "resid")
  
}

Flux attribution

flux_attribution <- function(df, ...) {
  
  group_by <- quos(...)
  # group_by <- quos(lon, lat, month)
  
  pco2_product_flux_attribution <-
    df %>%
    filter(name %in% c("dfco2", "kw_sol", "fgco2"))
  
  
  pco2_product_flux_attribution <-
    inner_join(
      pco2_product_flux_attribution %>%
        select(-c(value, fit)) %>%
        pivot_wider(values_from = resid,
                    names_prefix = "resid_"),
      pco2_product_flux_attribution %>%
        select(-c(value, resid)) %>%
        filter(name != "fgco2") %>%
        pivot_wider(values_from = fit)
    )
  
    pco2_product_flux_attribution <-
    pco2_product_flux_attribution %>%
    mutate(
      resid_fgco2_dfco2 = resid_dfco2 * kw_sol,
      resid_fgco2_kw_sol = resid_kw_sol * dfco2,
      resid_fgco2_dfco2_kw_sol = resid_dfco2 * resid_kw_sol
      # resid_fgco2_sum = resid_fgco2_dfco2 + resid_fgco2_kw_sol + resid_fgco2_dfco2_kw_sol
    )
  
  # pco2_product_flux_attribution <-
  #   pco2_product_flux_attribution %>%
  #   mutate(resid_fgco2_offset = resid_fgco2 - resid_fgco2_sum)
  
  pco2_product_flux_attribution <-
    pco2_product_flux_attribution %>%
    select(!!!group_by, starts_with("resid_fgco2")) %>%
    pivot_longer(starts_with("resid_"),
                 values_to = "resid")
  
  
  pco2_product_flux_attribution <-
    pco2_product_flux_attribution %>%
    filter(str_detect(name, "dfco2|kw_sol")) %>% 
    mutate(name = factor(
      name,
      levels = c(
        "resid_fgco2",
        "resid_fgco2_dfco2",
        "resid_fgco2_kw_sol",
        "resid_fgco2_dfco2_kw_sol",
        "resid_fgco2_sum",
        "resid_fgco2_offset"
      )
    ))
  
}

Maps

The following maps show the absolute state of each variable in 2023 as provided through the pCO2 product, the change in that variable from 1990 to 2023, as well es the anomalies in 2023. Changes and anomalies are determined based on the predicted value of a linear regression model fit to the data from 1990 to 2022.

Maps are first presented as annual means, and than as monthly means. Note that the 2023 predictions for the monthly maps are done individually for each month, such the mean seasonal anomaly from the annual mean is removed.

Note: The increase the computational speed, I regridded all maps to 5X5° grid.

Annual means

2023 absolute

pco2_product_map_annual_anomaly <-
  pco2_product_map_annual %>%
  drop_na() %>% 
  anomaly_determination(lon, lat)

pco2_product_map_annual_anomaly <-
  pco2_product_map_annual_anomaly %>%
  drop_na()

pco2_product_map_annual_anomaly %>%
  filter(year == 2023,
         !(name %in% name_divergent)) %>%
  group_split(name) %>%
  # head(1) %>%
  map(
    ~ map +
      geom_tile(data = .x,
                aes(lon, lat, fill = value)) +
      labs(title = paste("Annual mean", 2023)) +
      scale_fill_viridis_c(name = labels_breaks(.x %>% distinct(name))) +
      guides(
        fill = guide_colorbar(
          barheight = unit(0.3, "cm"),
          barwidth = unit(6, "cm"),
          ticks = TRUE,
          ticks.colour = "grey20",
          frame.colour = "grey20",
          label.position = "top",
          direction = "horizontal"
        )
      ) +
      theme(legend.title = element_markdown(),
            legend.position = "top")
  )

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
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8df7b5b jens-daniel-mueller 2024-06-26
pco2_product_map_annual_anomaly %>%
  filter(year == 2023,
         name %in% name_divergent) %>%
  group_split(name) %>% 
  # head(1) %>%
  map( ~ map +
         geom_tile(data = .x,
                   aes(lon, lat, fill = value)) +
         labs(title = paste("Annual mean", 2023)) +
         scale_fill_gradientn(
           colours = cmocean("curl")(100),
           rescaler = ~ scales::rescale_mid(.x, mid = 0),
           name = labels_breaks(.x %>% distinct(name)),
           limits = c(quantile(.x$value, .01), quantile(.x$value, .99)),
           oob = squish
         ) +
      guides(
        fill = guide_colorbar(
          barheight = unit(0.3, "cm"),
          barwidth = unit(6, "cm"),
          ticks = TRUE,
          ticks.colour = "grey20",
          frame.colour = "grey20",
          label.position = "top",
          direction = "horizontal"
        )
      ) +
      theme(legend.title = element_markdown(),
            legend.position = "top")
  )

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3a18c6c jens-daniel-mueller 2024-07-22

2023 anomaly

pco2_product_map_annual_anomaly %>%
  filter(year == 2023) %>%
  group_split(name) %>% 
  # head(1) %>%
  map( ~ map +
         geom_tile(data = .x,
                   aes(lon, lat, fill = resid)) +
         labs(title =  paste(2023,"anomaly")) +
         scale_fill_gradientn(
           colours = cmocean("curl")(100),
           rescaler = ~ scales::rescale_mid(.x, mid = 0),
           name = labels_breaks(.x %>% distinct(name)),
           limits = c(quantile(.x$resid, .01), quantile(.x$resid, .99)),
           oob = squish
         )+
      guides(
        fill = guide_colorbar(
          barheight = unit(0.3, "cm"),
          barwidth = unit(6, "cm"),
          ticks = TRUE,
          ticks.colour = "grey20",
          frame.colour = "grey20",
          label.position = "top",
          direction = "horizontal"
        )
      ) +
      theme(legend.title = element_markdown(),
            legend.position = "top")
  )

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3a18c6c jens-daniel-mueller 2024-07-22

SST flux slope

pco2_product_map_annual_slope <-
pco2_product_map_annual_anomaly %>%
  filter(year != 2023) %>% 
  select(year, lon, lat, resid, name) %>% 
  pivot_wider(values_from = resid) %>%
  select(lon, lat, fgco2, temperature) %>%
  drop_na() %>% 
  nest(data = -c(lon, lat)) %>%
  mutate(fit = map(data, ~ flm(
    formula = fgco2 ~ temperature, data = .x
  )))
  
pco2_product_map_annual_slope <-
  pco2_product_map_annual_slope %>%
  unnest_wider(fit) %>%
  select(lon, lat, slope = temperature) %>%
  mutate(slope = as.vector(slope))

map +
  geom_tile(data = pco2_product_map_annual_slope, 
            aes(lon, lat, fill = slope)) +
  scale_fill_gradientn(
    colours = cmocean("curl")(100),
    rescaler = ~ scales::rescale_mid(.x, mid = 0),
    limits = c(
      quantile(pco2_product_map_annual_slope$slope,.01),
      quantile(pco2_product_map_annual_slope$slope, .99)),
    oob = squish
  ) +
  labs(title = "Correlation of historic annual flux and SST anomalies") +
  guides(
    fill = guide_colorbar(
      barheight = unit(0.3, "cm"),
      barwidth = unit(6, "cm"),
      ticks = TRUE,
      ticks.colour = "grey20",
      frame.colour = "grey20",
      label.position = "top",
      direction = "horizontal"
    )
  ) +
  theme(legend.title = element_markdown(), legend.position = "top")

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8df7b5b jens-daniel-mueller 2024-06-26
pco2_product_map_annual_slope %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_map_annual_slope.csv"
    )
  )

pco2_product_map_annual_anomaly %>%
  filter(year == 2023) %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_map_annual_anomaly.csv"
    )
  )

rm(pco2_product_map_annual_anomaly,
   pco2_product_map_annual_slope)
gc()

Monthly means

2023 absolute

pco2_product_map_monthly_anomaly <-
  pco2_product_map_monthly %>%
  drop_na() %>% 
  anomaly_determination(lon, lat, month)

pco2_product_map_monthly_anomaly <-
  pco2_product_map_monthly_anomaly %>% 
  drop_na()



pco2_product_map_monthly_anomaly %>%
  filter(year == 2023, !(name %in% name_divergent)) %>%
  group_split(name) %>%
  # head(1) %>%
  map(
    ~ map +
      geom_tile(data = .x, aes(lon, lat, fill = value)) +
      labs(title = paste("Monthly means", 2023)) +
      scale_fill_viridis_c(name = labels_breaks(.x %>% distinct(name))) +
      guides(
        fill = guide_colorbar(
          barheight = unit(0.3, "cm"),
          barwidth = unit(6, "cm"),
          ticks = TRUE,
          ticks.colour = "grey20",
          frame.colour = "grey20",
          label.position = "top",
          direction = "horizontal"
        )
      ) +
      theme(legend.title = element_markdown(), legend.position = "top") +
      facet_wrap(~ month, ncol = 2)
  )

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Version Author Date
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0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
pco2_product_map_monthly_anomaly %>%
  filter(year == 2023, name %in% name_divergent) %>%
  group_split(name) %>%
  # head(1) %>%
  map(
    ~ map +
      geom_tile(data = .x, aes(lon, lat, fill = value)) +
      labs(title = paste("Monthly means", 2023)) +
      scale_fill_gradientn(
        colours = cmocean("curl")(100),
        rescaler = ~ scales::rescale_mid(.x, mid = 0),
        name = labels_breaks(.x %>% distinct(name)),
        limits = c(quantile(.x$value, .01), quantile(.x$value, .99)),
        oob = squish
      ) +
      guides(
        fill = guide_colorbar(
          barheight = unit(0.3, "cm"),
          barwidth = unit(6, "cm"),
          ticks = TRUE,
          ticks.colour = "grey20",
          frame.colour = "grey20",
          label.position = "top",
          direction = "horizontal"
        )
      ) +
      theme(legend.title = element_markdown(), legend.position = "top") +
      facet_wrap( ~ month, ncol = 2)
  )

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Version Author Date
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3a18c6c jens-daniel-mueller 2024-07-22

2023 anomaly

pco2_product_map_monthly_anomaly %>%
  filter(year == 2023) %>%
  group_split(name) %>%
  # head(1) %>%
  map(
    ~ map +
      geom_tile(data = .x, aes(lon, lat, fill = resid)) +
      labs(title = paste(2023, "anomaly")) +
      scale_fill_gradientn(
        colours = cmocean("curl")(100),
        rescaler = ~ scales::rescale_mid(.x, mid = 0),
        name = labels_breaks(.x %>% distinct(name)),
        limits = c(quantile(.x$resid, .01), quantile(.x$resid, .99)),
        oob = squish
      ) +
      guides(
        fill = guide_colorbar(
          barheight = unit(0.3, "cm"),
          barwidth = unit(6, "cm"),
          ticks = TRUE,
          ticks.colour = "grey20",
          frame.colour = "grey20",
          label.position = "top",
          direction = "horizontal"
        )
      ) +
      theme(legend.title = element_markdown(), legend.position = "top") +
      facet_wrap( ~ month, ncol = 2)
  )

Version Author Date
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fCO2 decomposition

pco2_product_map_monthly_fCO2_decomposition <-
  fco2_decomposition(pco2_product_map_monthly_anomaly,
                     year, month, lon, lat)


# pco2_product_map_monthly_fCO2_decomposition %>%
#   filter(year == 2023) %>%
#   mutate(product == "pco2 product") %>%
#   group_split(product) %>%
#   head(1) %>%
#   map(
#     ~ map +
#       geom_tile(data = .x,
#                 aes(lon, lat, fill = resid)) +
#       labs(title = .x$product) +
#       scale_fill_gradientn(
#         colours = cmocean("curl")(100),
#         rescaler = ~ scales::rescale_mid(.x, mid = 0),
#         name = labels_breaks("sfco2"),
#         limits = c(quantile(.x$resid, .01), quantile(.x$resid, .99)),
#         oob = squish
#       ) +
#       facet_grid(month ~ name,
#                  labeller = labeller(name = x_axis_labels)) +
#       guides(
#         fill = guide_colorbar(
#           barheight = unit(0.3, "cm"),
#           barwidth = unit(6, "cm"),
#           ticks = TRUE,
#           ticks.colour = "grey20",
#           frame.colour = "grey20",
#           label.position = "top",
#           direction = "horizontal"
#         )
#       ) +
#       theme(legend.title = element_markdown(),
#             legend.position = "top")
#   )
pco2_product_map_annual_fCO2_decomposition <-
  pco2_product_map_monthly_fCO2_decomposition %>% 
  select(year, lat, lon, name, resid) %>% 
  fgroup_by(year, lat, lon, name) %>% 
  fmean()

gc()
              used    (Mb)  gc trigger     (Mb)    max used     (Mb)
Ncells     3226480   172.4   323724888  17288.8   632275170  33767.2
Vcells 10188905688 77735.2 20376784134 155462.6 20376768662 155462.5
map +
  geom_tile(data = pco2_product_map_annual_fCO2_decomposition %>%
              filter(year == 2023), aes(lon, lat, fill = resid)) +
  scale_fill_gradientn(
    colours = cmocean("curl")(100),
    rescaler = ~ scales::rescale_mid(.x, mid = 0),
    name = labels_breaks("sfco2"),
    limits = c(
      quantile(pco2_product_map_annual_fCO2_decomposition$resid, .01),
      quantile(pco2_product_map_annual_fCO2_decomposition$resid, .99)
    ),
    oob = squish
  ) +
  facet_wrap( ~ name,
              ncol = 2,
              labeller = labeller(name = x_axis_labels)) +
  guides(
    fill = guide_colorbar(
      barheight = unit(0.3, "cm"),
      barwidth = unit(6, "cm"),
      ticks = TRUE,
      ticks.colour = "grey20",
      frame.colour = "grey20",
      label.position = "top",
      direction = "horizontal"
    )
  ) +
  theme(legend.title = element_markdown(), legend.position = "top")

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Flux attribution

pco2_product_map_monthly_flux_attribution <-
  flux_attribution(pco2_product_map_monthly_anomaly,
                   year, month, lon, lat)

# pco2_product_map_monthly_flux_attribution %>%
#   filter(year == 2023) %>%
#   drop_na() %>%
#   mutate(product == "pco2 product") %>%
#   group_split(product) %>%
#   head(1) %>%
#   map(
#     ~ map +
#       geom_tile(data = .x,
#                 aes(lon, lat, fill = resid)) +
#       labs(subtitle = .x$product) +
#       scale_fill_gradientn(
#         colours = cmocean("curl")(100),
#         rescaler = ~ scales::rescale_mid(.x, mid = 0),
#         name = labels_breaks("fgco2"),
#         limits = c(quantile(.x$resid, .01), quantile(.x$resid, .99)),
#         oob = squish
#       ) +
#       theme(legend.title = element_markdown(),
#             legend.position = "bottom") +
#       facet_grid(month ~ name,
#                  labeller = labeller(name = x_axis_labels)) +
#       guides(
#         fill = guide_colorbar(
#           barheight = unit(0.3, "cm"),
#           barwidth = unit(6, "cm"),
#           ticks = TRUE,
#           ticks.colour = "grey20",
#           frame.colour = "grey20",
#           label.position = "top",
#           direction = "horizontal"
#         )
#       ) +
#       theme(legend.title = element_markdown(),
#             legend.position = "top",
#             strip.text.x.top = element_markdown())
#   )
pco2_product_map_annual_flux_attribution <-
  pco2_product_map_monthly_flux_attribution %>% 
  group_by(year, lat, lon, name) %>% 
  summarise(resid = mean(resid, na.rm = TRUE)) %>% 
  ungroup()

map +
  geom_tile(data = pco2_product_map_annual_flux_attribution %>%
              filter(year == 2023), aes(lon, lat, fill = resid)) +
  scale_fill_gradientn(
    colours = cmocean("curl")(100),
    rescaler = ~ scales::rescale_mid(.x, mid = 0),
    name = labels_breaks("fgco2"),
    limits = c(
      quantile(pco2_product_map_annual_flux_attribution$resid, .01, na.rm = TRUE),
      quantile(pco2_product_map_annual_flux_attribution$resid, .99, na.rm = TRUE)
    ),
    oob = squish
  ) +
  theme(legend.title = element_markdown(), legend.position = "bottom") +
  facet_wrap(~ name,
             ncol = 2,
             labeller = labeller(name = x_axis_labels)) +
  guides(
    fill = guide_colorbar(
      barheight = unit(0.3, "cm"),
      barwidth = unit(6, "cm"),
      ticks = TRUE,
      ticks.colour = "grey20",
      frame.colour = "grey20",
      label.position = "top",
      direction = "horizontal"
    )
  ) +
  theme(
    legend.title = element_markdown(),
    legend.position = "top",
    strip.text.x.top = element_markdown()
    
  )

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gc()
              used    (Mb)  gc trigger     (Mb)    max used     (Mb)
Ncells     3246811   173.4   258979911  13831.1   632275170  33767.2
Vcells 10415929105 79467.3 20376784134 155462.6 20376768662 155462.5
pco2_product_map_monthly_anomaly %>%
  filter(year == 2023) %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_map_monthly_anomaly.csv"
    )
  )

pco2_product_map_annual_flux_attribution %>%
  filter(year == 2023) %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_map_annual_flux_attribution.csv"
    )
  )

pco2_product_map_annual_fCO2_decomposition %>%
  filter(year == 2023) %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_map_annual_fCO2_decomposition.csv"
    )
  )

pco2_product_map_monthly_flux_attribution %>%
  filter(year == 2023) %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_map_monthly_flux_attribution.csv"
    )
  )

pco2_product_map_monthly_fCO2_decomposition %>%
  filter(year == 2023) %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_map_monthly_fCO2_decomposition.csv"
    )
  )

rm(pco2_product_map_annual_flux_attribution,
   pco2_product_map_annual_fCO2_decomposition)

gc()

Hovmoeller plots

The following Hovmoeller plots show the anomalies from the prediction of the linear/quadratic fits.

Hovmoeller plots are first presented as annual means, and than as monthly means. Note that the predictions for the monthly Hovmoeller plots are done individually for each month, such the mean seasonal anomaly from the annual mean is removed.

2023 annual anomalies

pco2_product_hovmoeller_annual_anomaly <-
  pco2_product_hovmoeller_annual %>%
  anomaly_determination(lat) %>% 
  filter(!is.na(resid))

  
pco2_product_hovmoeller_annual_anomaly %>%
  # filter(name == "mld") %>%
  group_split(name) %>%
  # head(1) %>%
  map(
    ~ ggplot(data = .x, aes(year, lat, fill = resid)) +
      geom_raster() +
      scale_fill_gradientn(
        colours = cmocean("curl")(100),
        rescaler = ~ scales::rescale_mid(.x, mid = 0),
        name = labels_breaks(.x %>% distinct(name)),
        limits = c(quantile(.x$resid, .01), quantile(.x$resid, .99)),
        oob = squish
      ) +
      coord_cartesian(expand = 0) +
      labs(title = "Annual mean anomalies", y = "Latitude") +
      guides(
        fill = guide_colorbar(
          barheight = unit(0.3, "cm"),
          barwidth = unit(6, "cm"),
          ticks = TRUE,
          ticks.colour = "grey20",
          frame.colour = "grey20",
          label.position = "top",
          direction = "horizontal"
        )
      ) +
      theme(legend.title = element_markdown(), legend.position = "top")
  )

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38f6f6e jens-daniel-mueller 2024-05-22
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3a18c6c jens-daniel-mueller 2024-07-22

2023 monthly anomalies

pco2_product_hovmoeller_monthly_anomaly <-
  pco2_product_hovmoeller_monthly %>%
  select(-c(decimal)) %>% 
  anomaly_determination(lat, month) %>% 
  filter(!is.na(resid))

  
pco2_product_hovmoeller_monthly_anomaly <-
  pco2_product_hovmoeller_monthly_anomaly %>%
  mutate(decimal = year + (month - 1) / 12)
  
pco2_product_hovmoeller_monthly_anomaly %>%
  group_split(name) %>%
  # head(1) %>%
  map(
    ~ ggplot(data = .x,
             aes(decimal, lat, fill = resid)) +
      geom_raster() +
      scale_fill_gradientn(
        colours = cmocean("curl")(100),
        rescaler = ~ scales::rescale_mid(.x, mid = 0),
        name = labels_breaks(.x %>% distinct(name)),
        limits = c(quantile(.x$resid, .01), quantile(.x$resid, .99)),
        oob = squish
      ) +
      coord_cartesian(expand = 0) +
      labs(title = "Monthly mean anomalies",
           y = "Latitude") +
      guides(
        fill = guide_colorbar(
          barheight = unit(0.3, "cm"),
          barwidth = unit(6, "cm"),
          ticks = TRUE,
          ticks.colour = "grey20",
          frame.colour = "grey20",
          label.position = "top",
          direction = "horizontal"
        )
      ) +
      theme(legend.title = element_markdown(), legend.position = "top")
  )

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a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
054921b jens-daniel-mueller 2024-05-23
51df30d jens-daniel-mueller 2024-05-15
009791f jens-daniel-mueller 2024-05-14
fb21e78 jens-daniel-mueller 2024-05-08
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a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
054921b jens-daniel-mueller 2024-05-23
51df30d jens-daniel-mueller 2024-05-15
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5b2b715 jens-daniel-mueller 2024-06-11
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38f6f6e jens-daniel-mueller 2024-05-22
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a60be97 jens-daniel-mueller 2024-06-12
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5b2b715 jens-daniel-mueller 2024-06-11
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430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11

Version Author Date
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3a18c6c jens-daniel-mueller 2024-07-22

Three years prior 2023

pco2_product_hovmoeller_monthly_anomaly %>%
  filter(between(year, 2023-2, 2023)) %>%
  group_split(name) %>%
  # head(1) %>%
  map(
    ~ ggplot(data = .x,
             aes(decimal, lat, fill = resid)) +
      geom_raster() +
      scale_fill_gradientn(
        colours = cmocean("curl")(100),
        rescaler = ~ scales::rescale_mid(.x, mid = 0),
        name = labels_breaks(.x %>% distinct(name)),
        limits = c(quantile(.x$resid, .01), quantile(.x$resid, .99)),
        oob = squish
      ) +
      coord_cartesian(expand = 0) +
      labs(title = "Monthly mean anomalies",
           y = "Latitude") +
      guides(
        fill = guide_colorbar(
          barheight = unit(0.3, "cm"),
          barwidth = unit(6, "cm"),
          ticks = TRUE,
          ticks.colour = "grey20",
          frame.colour = "grey20",
          label.position = "top",
          direction = "horizontal"
        )
      ) +
      theme(legend.title = element_markdown(), legend.position = "top")
  )

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0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
009791f jens-daniel-mueller 2024-05-14
3b5d16b jens-daniel-mueller 2024-05-13
c7897dc jens-daniel-mueller 2024-05-08

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8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
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a3743ec jens-daniel-mueller 2024-05-25
054921b jens-daniel-mueller 2024-05-23
51df30d jens-daniel-mueller 2024-05-15
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5b2b715 jens-daniel-mueller 2024-06-11
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054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
51df30d jens-daniel-mueller 2024-05-15
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a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
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8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
51df30d jens-daniel-mueller 2024-05-15
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8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
51df30d jens-daniel-mueller 2024-05-15
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8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
e1e0ccb jens-daniel-mueller 2024-05-27
a3743ec jens-daniel-mueller 2024-05-25
d3d3c44 jens-daniel-mueller 2024-05-24
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
51df30d jens-daniel-mueller 2024-05-15
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8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
51df30d jens-daniel-mueller 2024-05-15
3b5d16b jens-daniel-mueller 2024-05-13
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8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
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a60be97 jens-daniel-mueller 2024-06-12
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5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
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a60be97 jens-daniel-mueller 2024-06-12
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5b2b715 jens-daniel-mueller 2024-06-11
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430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
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430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
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8df7b5b jens-daniel-mueller 2024-06-26
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430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
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3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
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Version Author Date
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3a18c6c jens-daniel-mueller 2024-07-22
pco2_product_hovmoeller_monthly_anomaly %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_hovmoeller_monthly_anomaly.csv"
    )
  )

rm(
  pco2_product_hovmoeller_annual,
  pco2_product_hovmoeller_monthly,
  pco2_product_hovmoeller_annual_anomaly,
  pco2_product_hovmoeller_monthly_anomaly
)

gc()

Regional means and integrals

The following plots show regionally averaged (or integrated) values of each variable as provided through the pCO2 product, as well as the anomalies from the prediction of a linear/quadratic fit.

Anomalies are first presented relative to the predicted annual mean of each year, hence preserving the seasonality. Furthermore, anomalies are presented relative to the predicted monthly mean values, such that the mean seasonality is removed.

2023 absolute values

Global non-polar

fig.height <- pco2_product_biome_monthly %>% 
  distinct(name) %>% 
  nrow()

fig.height <- (fig.height + 2) * 0.1
pco2_product_biome_monthly %>%
  filter(biome %in% "Global non-polar") %>%
  ggplot(aes(month, value, group = as.factor(year))) +
  geom_path(data = . %>% filter(!between(year, 2023-1, 2023)),
            aes(col = year)) +
  scale_color_grayC() +
  new_scale_color() +
  geom_path(data = . %>% filter(between(year, 2023-1, 2023)),
            aes(col = as.factor(year)),
            linewidth = 1) +
  scale_color_manual(values = c("orange", "red"),
                     guide = guide_legend(reverse = TRUE,
                                          order = 1)) +
  scale_x_continuous(breaks = seq(1, 12, 3), expand = c(0, 0)) +
  labs(title = "Absolute values | Global non-polar") +
  facet_wrap(name ~ .,
             scales = "free_y",
             labeller = labeller(name = x_axis_labels),
             strip.position = "left",
             ncol = 2) +
  theme(
    strip.text.y.left = element_markdown(),
    strip.placement = "outside",
    strip.background.y = element_blank(),
    legend.title = element_blank(),
    axis.title.y = element_blank()
  )

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
e1e0ccb jens-daniel-mueller 2024-05-27
d3d3c44 jens-daniel-mueller 2024-05-24
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
be285dc jens-daniel-mueller 2024-05-21
51df30d jens-daniel-mueller 2024-05-15
009791f jens-daniel-mueller 2024-05-14
3b5d16b jens-daniel-mueller 2024-05-13
fb21e78 jens-daniel-mueller 2024-05-08
c7897dc jens-daniel-mueller 2024-05-08

Key biomes

pco2_product_biome_monthly %>%
  filter(biome %in% key_biomes) %>%
  ggplot(aes(month, value, group = as.factor(year))) +
  geom_path(data = . %>% filter(!between(year, 2023-1, 2023)),
            aes(col = year)) +
  scale_color_grayC() +
  new_scale_color() +
  geom_path(data = . %>% filter(between(year, 2023-1, 2023)),
            aes(col = as.factor(year)),
            linewidth = 1) +
  scale_color_manual(values = c("orange", "red"),
                     guide = guide_legend(reverse = TRUE,
                                          order = 1)) +
  scale_x_continuous(breaks = seq(1, 12, 3), expand = c(0, 0)) +
  labs(title = "Absolute values | Selected biomes") +
  facet_grid(name ~ biome,
             scales = "free_y",
             labeller = labeller(name = x_axis_labels),
             switch = "y") +
  theme(
    strip.text.y.left = element_markdown(),
    strip.placement = "outside",
    strip.background.y = element_blank(),
    legend.title = element_blank(),
    axis.title.y = element_blank()
  )

Version Author Date
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
e1e0ccb jens-daniel-mueller 2024-05-27
d3d3c44 jens-daniel-mueller 2024-05-24
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
be285dc jens-daniel-mueller 2024-05-21
51df30d jens-daniel-mueller 2024-05-15
009791f jens-daniel-mueller 2024-05-14
3b5d16b jens-daniel-mueller 2024-05-13
fb21e78 jens-daniel-mueller 2024-05-08
c7897dc jens-daniel-mueller 2024-05-08
pco2_product_biome_monthly %>%
  filter(biome %in% key_biomes) %>%
  group_split(biome) %>%
  # head(1) %>%
  map(
    ~ ggplot(data = .x,
             aes(month, value, group = as.factor(year))) +
      geom_path(data = . %>% filter(!between(year, 2023-1, 2023)),
                aes(col = year)) +
      scale_color_grayC() +
      new_scale_color() +
      geom_path(
        data = . %>% filter(between(year, 2023-1, 2023)),
        aes(col = as.factor(year)),
        linewidth = 1
      ) +
      scale_color_manual(
        values = c("orange", "red"),
        guide = guide_legend(reverse = TRUE,
                             order = 1)
      ) +
      scale_x_continuous(breaks = seq(1, 12, 3), expand = c(0, 0)) +
  labs(title = paste("Absolute values |", .x$biome)) +
  facet_wrap(name ~ .,
             scales = "free_y",
             labeller = labeller(name = x_axis_labels),
             strip.position = "left",
             ncol = 2) +
  theme(
    strip.text.y.left = element_markdown(),
    strip.placement = "outside",
    strip.background.y = element_blank(),
    legend.title = element_blank(),
    axis.title.y = element_blank()
  )
  )

Version Author Date
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
e1e0ccb jens-daniel-mueller 2024-05-27
d3d3c44 jens-daniel-mueller 2024-05-24
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
be285dc jens-daniel-mueller 2024-05-21
51df30d jens-daniel-mueller 2024-05-15
3b5d16b jens-daniel-mueller 2024-05-13
fb21e78 jens-daniel-mueller 2024-05-08
c7897dc jens-daniel-mueller 2024-05-08

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e1e0ccb jens-daniel-mueller 2024-05-27
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054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
be285dc jens-daniel-mueller 2024-05-21
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a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
e1e0ccb jens-daniel-mueller 2024-05-27
d3d3c44 jens-daniel-mueller 2024-05-24
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
be285dc jens-daniel-mueller 2024-05-21
51df30d jens-daniel-mueller 2024-05-15
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a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
e1e0ccb jens-daniel-mueller 2024-05-27
d3d3c44 jens-daniel-mueller 2024-05-24
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
be285dc jens-daniel-mueller 2024-05-21
51df30d jens-daniel-mueller 2024-05-15
3b5d16b jens-daniel-mueller 2024-05-13
fb21e78 jens-daniel-mueller 2024-05-08
c7897dc jens-daniel-mueller 2024-05-08

2023 anomalies

Global non-polar

pco2_product_biome_monthly_detrended <-
  full_join(pco2_product_biome_monthly,
            pco2_product_biome_monthly_anomaly %>% select(-c(value, resid))) %>%
  mutate(resid = value - fit)

pco2_product_biome_monthly_detrended %>% 
  filter(biome %in% "Global non-polar") %>%
  ggplot(aes(month, resid, group = as.factor(year))) +
  geom_path(data = . %>% filter(!between(year, 2023-1, 2023)),
            aes(col = year)) +
  scale_color_grayC() +
  new_scale_color() +
  geom_path(data = . %>% filter(between(year, 2023-1, 2023)),
            aes(col = as.factor(year)),
            linewidth = 1) +
  scale_color_manual(values = c("orange", "red"),
                     guide = guide_legend(reverse = TRUE,
                                          order = 1)) +
  scale_x_continuous(breaks = seq(1, 12, 3), expand = c(0, 0)) +
  labs(title = "Anomalies from predicted monthly mean | Global non-polar") +
  facet_wrap(
    name ~ .,
    scales = "free_y",
    labeller = labeller(name = x_axis_labels),
    strip.position = "left",
    ncol = 2
  ) +
  theme(
    strip.text.y.left = element_markdown(),
    strip.placement = "outside",
    strip.background.y = element_blank(),
    axis.title.y = element_blank(),
    legend.title = element_blank()
  )

pco2_product_biome_monthly_detrended %>% 
  filter(biome %in% key_biomes) %>%
  ggplot(aes(month, resid, group = as.factor(year))) +
  geom_path(data = . %>% filter(!between(year, 2023-1, 2023)),
            aes(col = year)) +
  scale_color_grayC() +
  new_scale_color() +
  geom_path(data = . %>% filter(between(year, 2023-1, 2023)),
            aes(col = as.factor(year)),
            linewidth = 1) +
  scale_color_manual(values = c("orange", "red"),
                     guide = guide_legend(reverse = TRUE,
                                          order = 1)) +
  scale_x_continuous(breaks = seq(1, 12, 3), expand = c(0, 0)) +
  labs(title = "Anomalies from predicted monthly mean | Selected biomes") +
  facet_grid(
    name ~ biome,
    scales = "free_y",
    labeller = labeller(name = x_axis_labels),
    switch = "y"
  ) +
  theme(
    strip.text.y.left = element_markdown(),
    strip.placement = "outside",
    strip.background.y = element_blank(),
    axis.title.y = element_blank(),
    legend.title = element_blank()
  )

Key biomes

pco2_product_biome_monthly_detrended %>% 
  filter(biome %in% key_biomes) %>%
  ggplot(aes(month, resid, group = as.factor(year))) +
  geom_path(data = . %>% filter(!between(year, 2023-1, 2023)),
            aes(col = year)) +
  scale_color_grayC() +
  new_scale_color() +
  geom_path(data = . %>% filter(between(year, 2023-1, 2023)),
            aes(col = as.factor(year)),
            linewidth = 1) +
  scale_color_manual(values = c("orange", "red"),
                     guide = guide_legend(reverse = TRUE,
                                          order = 1)) +
  scale_x_continuous(breaks = seq(1, 12, 3), expand = c(0, 0)) +
  labs(title = "Anomalies from predicted monthly mean | Selected biomes") +
  facet_grid(
    name ~ biome,
    scales = "free_y",
    labeller = labeller(name = x_axis_labels),
    switch = "y"
  ) +
  theme(
    strip.text.y.left = element_markdown(),
    strip.placement = "outside",
    strip.background.y = element_blank(),
    axis.title.y = element_blank(),
    legend.title = element_blank()
  )

pco2_product_biome_monthly_detrended %>%
  filter(biome %in% key_biomes) %>%
  group_split(biome) %>%
  # head(1) %>%
  map(
    ~ ggplot(data = .x,
             aes(month, resid, group = as.factor(year))) +
      geom_path(data = . %>% filter(!between(year, 2023-1, 2023)),
                aes(col = year)) +
      scale_color_grayC() +
      new_scale_color() +
      geom_path(
        data = . %>% filter(between(year, 2023-1, 2023)),
        aes(col = as.factor(year)),
        linewidth = 1
      ) +
      scale_color_manual(
        values = c("orange", "red"),
        guide = guide_legend(reverse = TRUE,
                             order = 1)
      ) +
      scale_x_continuous(breaks = seq(1, 12, 3), expand = c(0, 0)) +
      labs(title = paste("Anomalies from predicted monthly mean |", .x$biome)) +
      facet_wrap(
        name ~ .,
        scales = "free_y",
        labeller = labeller(name = x_axis_labels),
        strip.position = "left",
        ncol = 2
      ) +
      theme(
        strip.text.y.left = element_markdown(),
        strip.placement = "outside",
        strip.background.y = element_blank(),
        axis.title.y = element_blank(),
        legend.title = element_blank()
      )
  )

pco2_product_biome_monthly_detrended %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_biome_monthly_detrended.csv"
    )
  )

2023 anomaly correlation

The following plots aim to unravel the correlation between regionally integrated monthly flux anomalies and the corresponding anomalies of the means/integrals of each other variable.

Anomalies are first presented are first presented in absolute units. Due to the different flux magnitudes, we need to plot integrated fluxes separately for each region. Secondly, we normalize the monthly anomalies to the spread (expressed as standard deviation) of the residuals from the fit.

Annual anomalies

Absolute

pco2_product_biome_annual_anomaly %>%
  filter(biome == "Global non-polar") %>%
  select(-c(value, fit)) %>% 
  pivot_wider(values_from = resid) %>% 
  pivot_longer(-c(year, biome, fgco2_int))  %>%
  ggplot(aes(value, fgco2_int)) +
  geom_hline(yintercept = 0) +
  geom_point(data = . %>% filter(!between(year, 2023-1, 2023)),
             aes(fill = year),
             shape = 21) +
  geom_smooth(
    data = . %>% filter(!between(year, 2023-1, 2023)),
    method = "lm",
    se = FALSE,
    fullrange = TRUE,
    aes(col = paste("Regression fit\nexcl.", 2023))
  ) +
  scale_color_grey() +
  scale_fill_grayC()+
  new_scale_fill() +
  geom_point(data = . %>% filter(between(year, 2023-1, 2023)),
             aes(fill = as.factor(year)),
             shape = 21, size = 2)  +
  scale_fill_manual(values = c("orange", "red"),
                     guide = guide_legend(reverse = TRUE,
                                          order = 1)) +
  labs(title = "Global non-polar integrated fluxes",
       y = labels_breaks("fgco2_int")$i_legend_title) +
  facet_wrap(
    ~ name,
    scales = "free_x",
    labeller = labeller(name = x_axis_labels),
    strip.position = "bottom",
    ncol = 2
  ) +
  theme(
    strip.text.x.bottom = element_markdown(),
    strip.placement = "outside",
    strip.background.x = element_blank(),
    axis.title.y = element_markdown(),
    axis.title.x = element_blank(),
    legend.title = element_blank()
  )

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
e1e0ccb jens-daniel-mueller 2024-05-27
d3d3c44 jens-daniel-mueller 2024-05-24
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
be285dc jens-daniel-mueller 2024-05-21
51df30d jens-daniel-mueller 2024-05-15
009791f jens-daniel-mueller 2024-05-14
3b5d16b jens-daniel-mueller 2024-05-13
fb21e78 jens-daniel-mueller 2024-05-08
c7897dc jens-daniel-mueller 2024-05-08

Monthly anomalies

Absolute

pco2_product_biome_monthly_detrended_anomaly <-
  pco2_product_biome_monthly_detrended %>%
  select(year, month, biome, name, resid) %>%
  pivot_wider(names_from = name,
              values_from = resid)


pco2_product_biome_monthly_detrended_anomaly %>%
  filter(biome == "Global non-polar") %>%
  pivot_longer(-c(year, month, biome, fgco2_int))  %>%
  ggplot(aes(value, fgco2_int)) +
  geom_hline(yintercept = 0) +
  geom_point(data = . %>% filter(year != 2023),
             aes(col = paste(min(year), max(year), sep = "-")),
             alpha = 0.2) +
  geom_smooth(
    data = . %>% filter(year != 2023),
    aes(col = paste(min(year), max(year), sep = "-")),
    method = "lm",
    se = FALSE,
    fullrange = TRUE
  )  +
  scale_color_grey(name = "") +
  new_scale_color() +
  geom_path(data = . %>% filter(year == 2023),
            aes(col = as.factor(month), group = 1))  +
  geom_point(data = . %>% filter(year == 2023),
             aes(fill =  as.factor(month)),
             shape = 21,
             size = 3)  +
  scale_color_scico_d(palette = "buda",
                     guide = guide_legend(reverse = TRUE,
                                          order = 1),
                     name = paste("Month\nof", 2023)) +
  scale_fill_scico_d(palette = "buda",
                     guide = guide_legend(reverse = TRUE,
                                          order = 1),
                     name = paste("Month\nof", 2023)) +
  labs(title = "Global non-polar integrated fluxes",
       y = labels_breaks("fgco2_int")$i_legend_title) +
  facet_wrap(
    ~ name,
    scales = "free_x",
    labeller = labeller(name = x_axis_labels),
    strip.position = "bottom",
    ncol = 2
  ) +
  theme(
    strip.text.x.bottom = element_markdown(),
    strip.placement = "outside",
    strip.background.x = element_blank(),
    axis.title.y = element_markdown(),
    axis.title.x = element_blank()
  )

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
e1e0ccb jens-daniel-mueller 2024-05-27
d3d3c44 jens-daniel-mueller 2024-05-24
054921b jens-daniel-mueller 2024-05-23
38f6f6e jens-daniel-mueller 2024-05-22
be285dc jens-daniel-mueller 2024-05-21
51df30d jens-daniel-mueller 2024-05-15
009791f jens-daniel-mueller 2024-05-14
3b5d16b jens-daniel-mueller 2024-05-13
fb21e78 jens-daniel-mueller 2024-05-08
c7897dc jens-daniel-mueller 2024-05-08
pco2_product_biome_monthly_detrended_anomaly %>%
  filter(!(biome %in% c(key_biomes, "Global non-polar"))) %>%
  pivot_longer(-c(year, month, biome, fgco2_int))  %>%
  filter(name %in% c("temperature", "chl", "dfco2", "kw_sol")) %>% 
  group_split(name) %>%
  head(1) %>%
  map(
    ~ ggplot(data = .x,
             aes(value, fgco2_int)) +
      geom_hline(yintercept = 0) +
      geom_point(
        data = . %>% filter(year != 2023),
        aes(col = paste(min(year), max(year), sep = "-")),
        alpha = 0.2
      ) +
      geom_smooth(
        data = . %>% filter(year != 2023),
        aes(col = paste(min(year), max(year), sep = "-")),
        method = "lm",
        se = FALSE,
        fullrange = TRUE
      )  +
      scale_color_grey(name = "") +
      new_scale_color() +
      geom_path(data = . %>% filter(year == 2023),
                aes(col = as.factor(month), group = 1))  +
      geom_point(
        data = . %>% filter(year == 2023),
        aes(fill = as.factor(month)),
        shape = 21,
        size = 3
      )  +
      scale_color_scico_d(
        palette = "buda",
        guide = guide_legend(reverse = TRUE,
                             order = 1),
        name = paste("Month\nof", 2023)
      ) +
      scale_fill_scico_d(
        palette = "buda",
        guide = guide_legend(reverse = TRUE,
                             order = 1),
        name = paste("Month\nof", 2023)
      ) +
      facet_wrap( ~ biome, ncol = 3, scales = "free") +
      labs(
        title = "Biome integrated fluxes",
        y = labels_breaks("fgco2_int")$i_legend_title,
        x = labels_breaks(.x %>% distinct(name))$i_legend_title
      ) +
      theme(axis.title.x = element_markdown(),
            axis.title.y = element_markdown())
  )

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
009791f jens-daniel-mueller 2024-05-14
3b5d16b jens-daniel-mueller 2024-05-13
fb21e78 jens-daniel-mueller 2024-05-08
c7897dc jens-daniel-mueller 2024-05-08

Relative to spread

pco2_product_biome_monthly_detrended_anomaly_spread <-
  pco2_product_biome_monthly_detrended_anomaly %>%
  pivot_longer(-c(month, biome, year)) %>%
  filter(year != 2023) %>%
  group_by(month, biome, name) %>%
  summarise(spread = sd(value, na.rm = TRUE)) %>%
  ungroup()



pco2_product_biome_monthly_detrended_anomaly_relative <-
  full_join(
    pco2_product_biome_monthly_detrended_anomaly_spread,
    pco2_product_biome_monthly_detrended_anomaly %>%
      pivot_longer(-c(month, biome, year))
  )

pco2_product_biome_monthly_detrended_anomaly_relative <-
  pco2_product_biome_monthly_detrended_anomaly_relative %>%
  mutate(value = value / spread) %>%
  select(-spread) %>%
  pivot_wider() %>%
  pivot_longer(-c(month, biome, year, fgco2_int))



pco2_product_biome_monthly_detrended_anomaly_relative %>%
  filter(name %in% c("temperature", "chl", "dfco2", "kw_sol")) %>% 
  group_split(name) %>%
  head(1) %>%
  map(
    ~ ggplot(data = .x,
             aes(value, fgco2_int)) +
      geom_vline(xintercept = 0) +
      geom_hline(yintercept = 0) +
      geom_point(
        data = . %>% filter(year != 2023),
        aes(col = paste(min(year), max(year), sep = "-")),
        alpha = 0.2
      ) +
      geom_smooth(
        data = . %>% filter(year != 2023),
        aes(col = paste(min(year), max(year), sep = "-")),
        method = "lm",
        se = FALSE,
        fullrange = TRUE
      )  +
      scale_color_grey(name = "") +
      new_scale_color() +
      geom_path(data = . %>% filter(year == 2023),
                aes(col = as.factor(month), group = 1))  +
      geom_point(
        data = . %>% filter(year == 2023),
        aes(fill = as.factor(month)),
        shape = 21,
        size = 3
      )  +
      scale_color_scico_d(
        palette = "buda",
        guide = guide_legend(reverse = TRUE,
                             order = 1),
        name = paste("Month\nof", 2023)
      ) +
      scale_fill_scico_d(
        palette = "buda",
        guide = guide_legend(reverse = TRUE,
                             order = 1),
        name = paste("Month\nof", 2023)
      ) +
      facet_wrap( ~ biome, ncol = 3) +
      coord_fixed() +
      labs(
        title = "Biome integrated fluxes normalized to spread",
        y = str_split_i(labels_breaks("fgco2_int")$i_legend_title, "<br>", i = 1),
        x = str_split_i(labels_breaks(.x %>% distinct(name))$i_legend_title, "<br>", i = 1)
      ) +
      theme(axis.title.x = element_markdown(),
            axis.title.y = element_markdown())
  )

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
009791f jens-daniel-mueller 2024-05-14
3b5d16b jens-daniel-mueller 2024-05-13
fb21e78 jens-daniel-mueller 2024-05-08
c7897dc jens-daniel-mueller 2024-05-08

fCO2 decomposition

biome_mask <-
  bind_rows(
    biome_mask,
    biome_mask %>% 
      filter(!str_detect(biome, "SO-SPSS|SO-ICE|Arctic")) %>% 
      mutate(biome = "Global non-polar")
  )

pco2_product_biome_monthly_fCO2_decomposition <-
  full_join(pco2_product_map_monthly_fCO2_decomposition,
            biome_mask,
            relationship = "many-to-many") %>% 
  group_by(year, month, biome, name) %>% 
  summarise(resid = mean(resid, na.rm = TRUE)) %>% 
  ungroup() %>% 
  drop_na()


pco2_product_biome_annual_fCO2_decomposition <-
  pco2_product_biome_monthly_fCO2_decomposition %>%
  group_by(year, biome, name) %>%
  summarise(resid = mean(resid)) %>%
  ungroup()


pco2_product_biome_monthly_fCO2_decomposition %>%
  filter(biome %in% c("Global non-polar", key_biomes)) %>%
  p_season(title  = paste("Anomalies from predicted monthly mean"))

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
f6a4369 jens-daniel-mueller 2024-07-01
8df7b5b jens-daniel-mueller 2024-06-26

Flux attribution

Seasonal

pco2_product_biome_monthly_flux_attribution <-
  full_join(pco2_product_map_monthly_flux_attribution,
            biome_mask,
            relationship = "many-to-many") %>% 
  group_by(year, month, biome, name) %>% 
  summarise(resid = mean(resid, na.rm = TRUE)) %>% 
  ungroup() %>% 
  drop_na()

pco2_product_biome_monthly_flux_attribution_total <-
  full_join(pco2_product_map_monthly_anomaly %>% 
              filter(name == "fgco2") %>% 
              mutate(name = "resid_fgco2"),
            biome_mask,
            relationship = "many-to-many") %>% 
  group_by(year, month, biome, name) %>% 
  summarise(resid = mean(resid, na.rm = TRUE)) %>% 
  ungroup() %>% 
  drop_na()

pco2_product_biome_monthly_flux_attribution <-
  bind_rows(
    pco2_product_biome_monthly_flux_attribution,
    pco2_product_biome_monthly_flux_attribution_total
  )


pco2_product_biome_annual_flux_attribution <-
  pco2_product_biome_monthly_flux_attribution %>%
  group_by(year, biome, name) %>%
  summarise(resid = mean(resid)) %>%
  ungroup()


pco2_product_biome_monthly_flux_attribution %>%
  filter(year == 2023,
         biome %in% c("Global non-polar", key_biomes)) %>%
  ggplot() +
  geom_hline(yintercept = 0) +
  geom_path(
    aes(month, resid)
  ) +
  geom_point(
    aes(month, resid),
    shape = 21,
    alpha = 0.5,
    col = "grey30"
  ) +
  scale_y_continuous(breaks = seq(-10,10,0.2)) +
  scale_x_continuous(position = "top", breaks = seq(1,12,3)) +
  labs(y = labels_breaks(unique("fgco2"))$i_legend_title) +
  facet_grid(biome ~ name,
             labeller = labeller(name = x_axis_labels),
             scales = "free_y",
             space = "free_y", 
             switch = "x") +
  theme(
    legend.title = element_blank(),
    axis.title.y = element_markdown(),
    strip.text.x.bottom = element_markdown(),
    strip.placement = "outside",
    strip.background.x = element_blank(),
    legend.position = "top"
  )

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
f6a4369 jens-daniel-mueller 2024-07-01
8df7b5b jens-daniel-mueller 2024-06-26
pco2_product_biome_monthly_flux_attribution %>%
  filter(biome %in% c("Global non-polar", key_biomes)) %>%
  p_season(title  = paste("Anomalies from predicted monthly mean"))

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
f6a4369 jens-daniel-mueller 2024-07-01
8df7b5b jens-daniel-mueller 2024-06-26

Annual

pco2_product_biome_annual_flux_attribution <-
  full_join(
    pco2_product_biome_annual_flux_attribution %>%
      filter(year == 2023) %>%
      select(-year),
    pco2_product_biome_annual_flux_attribution %>%
      filter(year != 2023) %>%
      group_by(biome, name) %>%
      summarise(resid_mean = mean(abs(resid))) %>%
      ungroup()
  )

# pco2_product_biome_annual_flux_attribution %>%
#   filter(biome %in% c("Global non-polar", key_biomes)) %>%
#   mutate(product == "pco2 product") %>%
#   group_split(product) %>%
#   # head(1) %>%
#   map(
#     ~ ggplot(data = .x) +
#       geom_col(aes("x", resid),
#                position = "dodge2") +
#       geom_col(
#         aes(
#           "x",
#           resid_mean * sign(resid),
#           col = paste0("Mean\nexcl.",2023)
#         ),
#         position = "dodge2",
#         fill = "transparent"
#       ) +
#       labs(y = labels_breaks(unique("fgco2"))$i_legend_title,
#            title = .x$biome) +
#       facet_grid(
#         biome~name,
#         labeller = labeller(name = x_axis_labels),
#         switch = "x"
#       ) +
#       scale_color_grey() +
#       theme(
#         legend.title = element_blank(),
#         axis.text.x = element_blank(),
#         axis.ticks.x = element_blank(),
#         axis.title.x = element_blank(),
#         axis.title.y = element_markdown(),
#         strip.text.x.bottom = element_markdown(),
#         strip.placement = "outside",
#         strip.background.x = element_blank(),
#         legend.position = "top"
#       )
#   )
pco2_product_biome_annual_flux_attribution %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_biome_annual_flux_attribution.csv"
    )
  )

pco2_product_biome_monthly_flux_attribution %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_biome_monthly_flux_attribution.csv"
    )
  )

pco2_product_biome_annual_fCO2_decomposition %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_biome_annual_fCO2_decomposition.csv"
    )
  )

pco2_product_biome_monthly_fCO2_decomposition %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_biome_monthly_fCO2_decomposition.csv"
    )
  )

rm(
  pco2_product_biome_annual_flux_attribution,
  pco2_product_biome_monthly_flux_attribution,
  pco2_product_biome_annual_fCO2_decomposition,
  pco2_product_biome_monthly_fCO2_decomposition
)

gc()

Zonal mean sections

The following analysis is available for GOBMs only.

Annual means

2023 anomaly

pco2_product_zonal_mean_annual <-   pco2_product_zonal_mean %>%
  pivot_longer(-c(region, depth, lat, time, year, month)) %>%
  group_by(region, lat, depth, year, name) %>%
  summarise(value = mean(value)) %>%
  ungroup() %>%
  drop_na() %>%
  mutate(region = str_to_title(region))

pco2_product_zonal_mean_annual_anomaly <-
  pco2_product_zonal_mean_annual %>% 
  anomaly_determination(region, lat, depth)

pco2_product_zonal_mean_annual_anomaly %>%
  filter(year == 2023) %>%
  group_split(name) %>%
  # head(3) %>%
  map(
    ~ ggplot(data = .x) +
      geom_contour_filled(aes(lat, depth, z = resid)) +
      scale_fill_discrete_divergingx(name = labels_breaks(.x %>% distinct(name))$i_legend_title) +
      guides(fill = guide_colorsteps(
        barheight = unit(8, "cm"),
        show.limits = TRUE
      )) +
      scale_y_continuous(trans = trans_reverser("sqrt"),
                         breaks = c(50,100,200,400)) +
      scale_x_continuous(breaks = seq(-100, 100, 20)) +
      coord_cartesian(expand = 0) +
      facet_wrap( ~ region, ncol = 1) +
      labs(y = "Depth (m)") +
      theme(legend.title = element_markdown())
  )
pco2_product_zonal_mean_annual_anomaly %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_zonal_mean_sections_annual.csv"
    )
  )

Biome profiles

The following analysis is available for GOBMs only.

Annual means

2023 anomaly

pco2_product_profiles_annual <-   pco2_product_profiles %>%
  pivot_longer(-c(biome, depth, time, year, month)) %>%
  group_by(biome, depth, year, name) %>%
  summarise(value = mean(value)) %>%
  ungroup() %>%
  drop_na()

pco2_product_profiles_annual_anomaly <-
  pco2_product_profiles_annual %>% 
  anomaly_determination(biome, depth)

pco2_product_profiles_annual_anomaly %>%
  group_split(name) %>%
  # head(1) %>%
  map(
    ~ ggplot(data = .x) +
      geom_path(aes(resid, depth, group = year), col = "grey30", alpha = 0.5) +
      geom_path(data = .x %>% filter(year == 2023),
                aes(resid, depth, col = as.factor(year)),
                linewidth = 1) +
      scale_y_continuous(trans = trans_reverser("sqrt"),
                         breaks = c(50,100,200,400)) +
      facet_wrap( ~ biome) +
      labs(y = "Depth (m)",
           x = labels_breaks(.x %>% distinct(name))$i_legend_title) +
      theme(legend.title = element_blank(),
            axis.title.x = element_markdown())
  )

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
ddef92a jens-daniel-mueller 2024-05-25
d3d3c44 jens-daniel-mueller 2024-05-24

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
ddef92a jens-daniel-mueller 2024-05-25
d3d3c44 jens-daniel-mueller 2024-05-24

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
ddef92a jens-daniel-mueller 2024-05-25
d3d3c44 jens-daniel-mueller 2024-05-24

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
ddef92a jens-daniel-mueller 2024-05-25
d3d3c44 jens-daniel-mueller 2024-05-24

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
ddef92a jens-daniel-mueller 2024-05-25

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
pco2_product_profiles_annual_anomaly %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_profiles_annual.csv"
    )
  )

Monthly means

2023 anomaly

pco2_product_profiles_monthly <-   pco2_product_profiles %>%
  pivot_longer(-c(biome, depth, time, year, month)) %>%
  group_by(biome, depth, year, month, name) %>%
  summarise(value = mean(value)) %>%
  ungroup() %>%
  drop_na()

pco2_product_profiles_monthly_anomaly <-
  pco2_product_profiles_monthly %>% 
  anomaly_determination(biome, depth, month)

pco2_product_profiles_monthly_anomaly %>%
  filter(year == 2023) %>% 
  group_split(name) %>%
  # head(1) %>%
  map(
    ~ ggplot(data = .x) +
      geom_vline(xintercept = 0) +
      geom_path(aes(resid, depth, col = as.factor(month)),
                linewidth = 1) +
      scale_color_scico_d(palette = "hawaii") +
      scale_y_continuous(trans = trans_reverser("sqrt"),
                         breaks = c(50, 100, 200, 400)) +
      facet_wrap(~ biome,
                 scales = "free_x") +
      labs(y = "Depth (m)",
           x = labels_breaks(.x %>% distinct(name))$i_legend_title) +
      theme(legend.title = element_blank(),
            axis.title.x = element_markdown())
  )

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
ddef92a jens-daniel-mueller 2024-05-25
d3d3c44 jens-daniel-mueller 2024-05-24

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
ddef92a jens-daniel-mueller 2024-05-25
d3d3c44 jens-daniel-mueller 2024-05-24

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
ddef92a jens-daniel-mueller 2024-05-25
d3d3c44 jens-daniel-mueller 2024-05-24

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
ddef92a jens-daniel-mueller 2024-05-25
d3d3c44 jens-daniel-mueller 2024-05-24

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11
03d196b jens-daniel-mueller 2024-06-11
a3743ec jens-daniel-mueller 2024-05-25
ddef92a jens-daniel-mueller 2024-05-25

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
0db8b2b jens-daniel-mueller 2024-07-10
430e926 jens-daniel-mueller 2024-07-10
8df7b5b jens-daniel-mueller 2024-06-26
a60be97 jens-daniel-mueller 2024-06-12
775b99c jens-daniel-mueller 2024-06-12
5b2b715 jens-daniel-mueller 2024-06-11

Version Author Date
923ec8f jens-daniel-mueller 2024-08-23
3a18c6c jens-daniel-mueller 2024-07-22
pco2_product_profiles_monthly_anomaly %>%
  write_csv(
    paste0(
      "../data/",
      "FESOM-REcoM",
      "_",
      "2023",
      "_profiles_monthly.csv"
    )
  )

sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.5

Matrix products: default
BLAS:   /usr/local/R-4.2.2/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.2.2/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] scales_1.2.1        cmocean_0.3-1       ggtext_0.1.2       
 [4] broom_1.0.5         khroma_1.9.0        ggnewscale_0.4.8   
 [7] seacarb_3.3.1       SolveSAPHE_2.1.0    oce_1.7-10         
[10] gsw_1.1-1           lubridate_1.9.0     timechange_0.1.1   
[13] stars_0.6-0         abind_1.4-5         terra_1.7-65       
[16] sf_1.0-9            rnaturalearth_0.1.0 geomtextpath_0.1.1 
[19] colorspace_2.0-3    marelac_2.1.10      shape_1.4.6        
[22] ggforce_0.4.1       metR_0.13.0         scico_1.3.1        
[25] patchwork_1.1.2     collapse_1.8.9      forcats_0.5.2      
[28] stringr_1.5.0       dplyr_1.1.3         purrr_1.0.2        
[31] readr_2.1.3         tidyr_1.3.0         tibble_3.2.1       
[34] ggplot2_3.4.4       tidyverse_1.3.2     workflowr_1.7.0    

loaded via a namespace (and not attached):
  [1] readxl_1.4.1            backports_1.4.1         systemfonts_1.0.4      
  [4] lwgeom_0.2-10           sp_1.5-1                splines_4.2.2          
  [7] digest_0.6.30           htmltools_0.5.3         ncmeta_0.3.5           
 [10] fansi_1.0.3             magrittr_2.0.3          checkmate_2.1.0        
 [13] memoise_2.0.1           googlesheets4_1.0.1     tzdb_0.3.0             
 [16] modelr_0.1.10           vroom_1.6.0             rvest_1.0.3            
 [19] textshaping_0.3.6       haven_2.5.1             xfun_0.35              
 [22] callr_3.7.3             crayon_1.5.2            jsonlite_1.8.3         
 [25] glue_1.6.2              polyclip_1.10-4         gtable_0.3.1           
 [28] gargle_1.2.1            cubelyr_1.0.2           DBI_1.1.3              
 [31] Rcpp_1.0.11             viridisLite_0.4.1       gridtext_0.1.5         
 [34] units_0.8-0             bit_4.0.5               proxy_0.4-27           
 [37] httr_1.4.4              RColorBrewer_1.1-3      ellipsis_0.3.2         
 [40] pkgconfig_2.0.3         farver_2.1.1            sass_0.4.4             
 [43] dbplyr_2.2.1            utf8_1.2.2              here_1.0.1             
 [46] tidyselect_1.2.0        labeling_0.4.2          rlang_1.1.1            
 [49] later_1.3.0             munsell_0.5.0           cellranger_1.1.0       
 [52] tools_4.2.2             cachem_1.0.6            cli_3.6.1              
 [55] generics_0.1.3          evaluate_0.18           fastmap_1.1.0          
 [58] yaml_2.3.6              processx_3.8.0          knitr_1.41             
 [61] bit64_4.0.5             fs_1.5.2                RNetCDF_2.6-1          
 [64] nlme_3.1-160            whisker_0.4             xml2_1.3.3             
 [67] compiler_4.2.2          rstudioapi_0.15.0       e1071_1.7-12           
 [70] reprex_2.0.2            tweenr_2.0.2            bslib_0.4.1            
 [73] stringi_1.7.8           highr_0.9               ps_1.7.2               
 [76] lattice_0.20-45         Matrix_1.5-3            classInt_0.4-8         
 [79] commonmark_1.8.1        markdown_1.4            vctrs_0.6.4            
 [82] pillar_1.9.0            lifecycle_1.0.3         jquerylib_0.1.4        
 [85] data.table_1.14.6       httpuv_1.6.6            R6_2.5.1               
 [88] promises_1.2.0.1        KernSmooth_2.23-20      codetools_0.2-18       
 [91] MASS_7.3-58.1           assertthat_0.2.1        rprojroot_2.0.3        
 [94] withr_2.5.0             mgcv_1.8-41             parallel_4.2.2         
 [97] hms_1.1.2               grid_4.2.2              rnaturalearthdata_0.1.0
[100] class_7.3-20            rmarkdown_2.18          googledrive_2.0.0      
[103] git2r_0.30.1            getPass_0.2-2